Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00926 ATGAAGGCTCCATCCAACGGTTACTTGCCTAATTCTGGCGAAGGGGAAAGGAAGACAATCAATTCAGAGTTATGGCACGCTTGTGCTGGACCTTTGGTTTCTTTGCCTCCTGTTGGTAGTCTTGTGGTTTACTTCCCCCAAGGACACAGTGAACAAGTTGCAGCTTCCATGCAAAAGGAGGCTGACTTCATACCAAGTTACCCTAACCTTCCATCCAAGTTGATTTGCATGCTTCACAATGTTGCGTTGCATGCTGATCCTGAAACTGACGAGGTGTATGCACAGATGACCCTTCAACCTGTAAACAAATATGAGAAAGAAGCAATACTGGCATCAGACATGGGTCTCAAACAAAACCGTCAACCCACTGAGTTCTTTTGCAAAACTCTTACAGCTAGTGACACTAGCACTCATGGTGGATTTTCTGTGCCACGTAGAGCAGCTGAGAAAATATTCCCACCTTTGGATTATTCAATGCAACCTCCAGCTCAGGAGCTTGTTGCCAAGGATTTGCACGACAATACATGGGCATTTAGACATATTTATCGGGgacaaccaaagaggcatctattgactactggatggagtgtatttgtcagCACTAAAAGACTGTTTGCCGGAGATTCTGTTCTTTTTATCAGAGATGAAAAACAGCATCTTCTTTTAGGTATAAGGCGTGCTAATAGACATCAACCAGCACTCTCTTCGTCAGTGATATCCAGTGACAGCATGCATATTGGCATTCTTGCTGCTGCTGCTCATGCTGCTGCAAATAACAGCCCATTCACTATATTTTACAATCCAAGGGCTAGCCCCTCTGAATTTGTTGTTCCATTAGCCAAGTATAACAAAGTCACGTACACCCAAGTTTCTCTTGGAATGAGATTTAGAATGATGTTTGAAACTGAGGAGTCTGGGGTACGCAGATATATGGGGACAATCACTGGGATCAATGACTTGGATCCTGTCCGATGGAAAAGCTCACAGTGGCGCAATATTCAGGTTGGATGGGATGAATCAACAGCTGGTGAACGCCCCAGTAGAGTTTCAATCTGGGAAATTGAACCAGTGGTGACTCCTTTCTACATTTGTCCACCTCCATTTTTTAGGCCAAAGTTCCCCCGGCAACCAGGAATGCCAGATGATGAGTCAGATATGGAAAATGCTTTCAAAAGAGCAGTGCCCTGGCTTGGAGATGACTTTGGCATGAAGGATGCCTCAAGTTCAATATTTCCTGGTTTCAGTTTAGTGCAATGGATGAGCATGCAGCAGAATAACCAGCTCACTGCTGCTCAATCAGGATGTTTCCCATCAATGCTTCCATTTAATACCCTTCAGGGTAACCTTAGCACTGATGACCCTTCCAAGTTATTGAGCTTTCAAGCTCCTGTCCTCTCTACCCCAAGTCTTCAATTAAACAAACCTAATCTACCAAATCAAATCAAccagttgcaacagtctccagtgtcatggcctcagcagcaacagttgcagcaacaacaacagctgcagcagcagcaacagcaacaacaacagcagcagcagcagctacagcagcaacaacagcagcagctacagtcattgttgcaagtaccaatgaaccatctccagcagcagagggaacaacaactgcctgaaccacaaaatctgccattgtggcagcaactgcctcagcagctaggacagcagcctcagaaacaacagtcaagtcaacatgctactattaTGAATAATGGGGTAGTCGCCTCTAACCAGATTACAAATCAGTTTTCACAACAACCAATGGCATATGGTCAACTTCAGCAACAACAGTTACTCTCAGGAGGTATCCAGTCAGCTACTAAGAATACATTGCCATTGACATCCTTACCACAAGACTCACAATTTCAGCAACAGATAGATCAGCAAGCTAGCCTCTTACAGAGGCAGCAACAACAACAGCAGACACAATTGCAACAATCTCCATTGCAGTTGTTGCAGCAAAACCTGCCACAGAGAGCACCACAACAACCCCCAGCCACTCAAATGTTACAGCAAAATCCCTCTGAGcaacaactccacctgcagttgctacagaaattgcagcagcagcagcagcatcaacaacGACTACTTTCCACGTCTACCCCACTTTTGCTGTCTCAGCTTCTACAACAACAAAATACTCACCAACAAAACCAGCAATTACCGCAGCCCCTGCCGCCTATATCTCAGCATCAACCTCAACAACTAGTCAATAACGCATTCTCAACAGAGAAGCTTCTCAACAGCAACAACTTATCTTCATCTCTTATGCAATCACAGAAGCTTTCAATGAACCATCCCCAGAATACACAGAAATCACTTACCATCACTAGAGCTCCCTCTACACTAACTGAGGGAGATGCCCCATCATGCTCAACCTCTCCATCTACTAATAACTGCCAGGTGACTCCCCCAAACCTCCTGAAAAGAAATCAGCAATTACCAGCCACATTAAGGGGAAGTTTGATAGTTGAGCCCACTAGTAATCTGATACAGGAGCTTCACAGTAAGCCTGACACGCAGATCAAACAGGAGTTTCTCAATGTAAAAGGACCTGACCAGTTGAAGTATAAAGGGACAATTACTGATCAACTAGAAGCTTCTTCTGGAACATCTTACTGTCTTGATCCTCCTGGTAATGTCCAGCAGAACTTGCCACTTTCCAACTTCTGCATGGAAGGGGATGTCCAATCACACCCAAGAAATAGTTTACCATTTGACTCCAATCTGGATGGTCTAACCCCTGATACTATGCTTCTAACGGGGTATGACTCTCAAAAAGATCTTCAAAATTTGTTGTCTAACTATGGTGGTGCTCCAAGAGAGATTGAAACTGAGCTGTCAACTGCTGACATCAGCTCACAGTCGTTTGGAGTGCCAAACATGCCTTTCAAGCCAGGTTGCTCAAGTGATGTTGGCATCAATGATACTGGGGTTTTAAATAATAATAATGGCTTGCGGGCTAACCAAACTCCACGAATGCGAACATATACTAAGGTTCAAAAGCGTGGCTCTGTTGGAAGATGTATTGATGTTACCCGTTACAAGGGATATGATGAACTCCGGCATGATTTGGCTAGAATGTTTGGGATTGAAGGGCAGCTAGAAGATCCTCTAAGGACTGATTGGAAATTAGTATATGTGGATCATGAAAATGACATTCTTCTTGTTGGTGATGACCCTTGGGATGAATTTGTAAGCTGTGTCCAGAGCATAAAGATATTGTCATCTGCAGAAGTGCAGCAAATGAGCTTGGATGGGGATTTAGGTGGTAATGTTCCAATCCCCAATCAAGCTTACAGTGGGACAGACAGTGGCAATGCATGGAGGGGACAGTATGAAGATAACTCAGCTGCCTCCTTTAATAGGTAA 3396 0.3881 MKAPSNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYEKEAILASDMGLKQNRQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDYSMQPPAQELVAKDLHDNTWAFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQHLLLGIRRANRHQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPSEFVVPLAKYNKVTYTQVSLGMRFRMMFETEESGVRRYMGTITGINDLDPVRWKSSQWRNIQVGWDESTAGERPSRVSIWEIEPVVTPFYICPPPFFRPKFPRQPGMPDDESDMENAFKRAVPWLGDDFGMKDASSSIFPGFSLVQWMSMQQNNQLTAAQSGCFPSMLPFNTLQGNLSTDDPSKLLSFQAPVLSTPSLQLNKPNLPNQINQLQQSPVSWPQQQQLQQQQQLQQQQQQQQQQQQQLQQQQQQQLQSLLQVPMNHLQQQREQQLPEPQNLPLWQQLPQQLGQQPQKQQSSQHATIMNNGVVASNQITNQFSQQPMAYGQLQQQQLLSGGIQSATKNTLPLTSLPQDSQFQQQIDQQASLLQRQQQQQQTQLQQSPLQLLQQNLPQRAPQQPPATQMLQQNPSEQQLHLQLLQKLQQQQQHQQRLLSTSTPLLLSQLLQQQNTHQQNQQLPQPLPPISQHQPQQLVNNAFSTEKLLNSNNLSSSLMQSQKLSMNHPQNTQKSLTITRAPSTLTEGDAPSCSTSPSTNNCQVTPPNLLKRNQQLPATLRGSLIVEPTSNLIQELHSKPDTQIKQEFLNVKGPDQLKYKGTITDQLEASSGTSYCLDPPGNVQQNLPLSNFCMEGDVQSHPRNSLPFDSNLDGLTPDTMLLTGYDSQKDLQNLLSNYGGAPREIETELSTADISSQSFGVPNMPFKPGCSSDVGINDTGVLNNNNGLRANQTPRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWDEFVSCVQSIKILSSAEVQQMSLDGDLGGNVPIPNQAYSGTDSGNAWRGQYEDNSAASFNR 1131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00926 1131 CDD B3_DNA 125 226 IPR003340 GO:0003677
Gma13g00926 1131 PANTHER AUXIN RESPONSE FACTOR 19 1 1119 - -
Gma13g00926 1131 MobiDBLite consensus disorder prediction 1104 1131 - -
Gma13g00926 1131 Gene3D - 289 360 - -
Gma13g00926 1131 Gene3D - 999 1092 - -
Gma13g00926 1131 Pfam AUX/IAA family 999 1089 IPR033389 -
Gma13g00926 1131 Coils Coil 493 523 - -
Gma13g00926 1131 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Gma13g00926 1131 ProSiteProfiles PB1 domain profile. 1003 1096 IPR000270 GO:0005515
Gma13g00926 1131 MobiDBLite consensus disorder prediction 789 811 - -
Gma13g00926 1131 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma13g00926 1131 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 1119 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma13g00926 1131 SUPERFAMILY CAD & PB1 domains 1016 1081 - -
Gma13g00926 1131 SMART B3_2 126 228 IPR003340 GO:0003677
Gma13g00926 1131 MobiDBLite consensus disorder prediction 664 684 - -
Gma13g00926 1131 Pfam B3 DNA binding domain 126 227 IPR003340 GO:0003677
Gma13g00926 1131 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Gma13g00926 1131 Gene3D - 123 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00926 Gma-Chr13 23397235 23403638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00926 1 487 B3 DNA Binding Superfamily AT1G19220 82.546 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma13g00926 AUX_IAA 6.1e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00926 - K14486 gmx:100805456 1839.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00926 13 23397235 23403638 Gma13g00926 13 23397235 23403638 ECH
Gma17g00443 17 3623651 3629621 Gma13g00926 13 23397235 23403638 GST
Gma13g00926 13 23397235 23403638 Gma15g01689 15 17748841 17757950 PCT
Gma13g00926 13 23397235 23403638 Gma09g00660 09 7621370 7629225 PCT
Gma15g01689 15 17748841 17757950 Gma13g00926 13 23397235 23403638 PCT
Gma09g00660 09 7621370 7629225 Gma13g00926 13 23397235 23403638 PCT