Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00924 ATGATGGTGAAGCCGAGTAGCGAAAAGCCAGAGGAGCATAGGGATTCCAAGTACTACAAAGGGGTCCGAAAGAGAAAATGGGGCAAATGGGTATCCGAAATAAGACTACCCAACAGCCGTCAGAGGATTTGGTTGGGATCCTTCGACACCCCCGAGAAGGCCGCGCGTGCCTTCGACGCCGCAATGTTCTGCTTACGTGGCCGCAACGCCAAGTTCAATTTCCCCGACAACCCACCCGACATCGCCGGCGGGGAATCCATGACGCCGTCACAGATTCAGGTCGCCGCCGCACAATTCGCCAACGCTGGGCCCCACGAGGGACATTCGGGTCGACCCGAACATTCTCCCATGCAATCTCTATCGCCTTCTGTTTCAGAAGGGACCGTTCTAACGGACAGTGACGTCACCACACTTAACGGTTCGCTAACGGATTTGTTCACTCCCGTTGGGTCGAGTGGTTACGCATCCGATTACGGGATTTTCCCCGGTGTTGATGATTTCAGTGGCGGTTTTTATGTGCCGGAAATGCTGAACTTTAATTATGGAGAAGAAAACGGGGAAGGGTTCATAGTTGATGAGTCTTTCTTGTGGAATTTTTGA 600 0.5267 MMVKPSSEKPEEHRDSKYYKGVRKRKWGKWVSEIRLPNSRQRIWLGSFDTPEKAARAFDAAMFCLRGRNAKFNFPDNPPDIAGGESMTPSQIQVAAAQFANAGPHEGHSGRPEHSPMQSLSPSVSEGTVLTDSDVTTLNGSLTDLFTPVGSSGYASDYGIFPGVDDFSGGFYVPEMLNFNYGEENGEGFIVDESFLWNF 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00924 199 ProSiteProfiles AP2/ERF domain profile. 18 75 IPR001471 GO:0003700|GO:0006355
Gma13g00924 199 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Gma13g00924 199 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Gma13g00924 199 SMART rav1_2 18 81 IPR001471 GO:0003700|GO:0006355
Gma13g00924 199 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Gma13g00924 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF017-LIKE 8 199 - -
Gma13g00924 199 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 8 199 - -
Gma13g00924 199 Pfam AP2 domain 19 67 IPR001471 GO:0003700|GO:0006355
Gma13g00924 199 CDD AP2 19 77 IPR001471 GO:0003700|GO:0006355
Gma13g00924 199 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Gma13g00924 199 MobiDBLite consensus disorder prediction 102 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00924 Gma-Chr13 23388470 23389440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00924 19 199 AP2-EREBP Transcription Factor Family AT1G19210 49.206 1.00e-56 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g00924 AP2 4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00924 - - gmx:100804384 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00924 13 23388470 23389440 Gma13g00924 13 23388470 23389440 ECH