Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00921 ATGCAACCACAGAGGTTAAGGCAGCATGCCATGTTGCAACCATCTCTCTACCACCACCCCGCTCTCCTTACTCCTCCTCAGATAGAGCCTATCTTGAGTGGAAATCTGCCACCTGGCTTTGATTCGAGTTCATGCCGCAGTGTTTATGTTGGCAACATTCATCCCCAGGTTACAGATTCCCTTCTTCAAGAGCTTTTTTCAACTGCAGGCGCCCTTGAAGGATGTAAACTTATTAGGAAAGAGAAGTCATCCTATGGCTTTGTGGACTACTTTGATCGCAGTTCTGCTGCATTTGCCATTGTAACTCTCAATGGGAGGAATATTTTTGGGCAGCCTATTAAGGTTAACTGGGCTTATGCTAGCAGCCAGAGAGAGGATACCTCAGGTCACTTTAATATTTTTGTCGGTGACCTTAGTCCTGAGGTTACAGATGCGACATTGTATGCTTGCTTCTCTGTATATCCTAGTTGTTCTGATGCAAGGGTAATGTGGGATCAGAAGACAGGCCGTTCCAGGGGATTTGGATTTGTTTCTTTTCGGAATCAGCAGGATGCCCAAAGTGCTATAAATGATTTGACTGGAAAATGGCTTGGAAGTAGACAGATTCGTTGTAATTGGGCAACCAAAGGGGCCAGTGCCAGTGATGAAAAGCAGAGTTCGGATTCAAAAATTGTCGTGGAGTCGACAAATGGATCATCCGAAGAAGGCCAGGAAACAACCAATGATGACACTCCCGAGAAGAATCCTCAATATACCACTGTTTATGCTGTGAAATTGCAGGTTACTTCTGTTGATCTCCATCAACATTTTCATTCTCTTAATGCCGGAATTATTGAAGATGTTAGGGTGCAACGAGACAAAGGTTTTGGGTTTGTGAGATACAGTACCCATGCTGAAGCAGCTCTTGCTATACAGATGGGTAATGCCCGAATTCTATTTGGCAAACCTATCAAGTGTTCATGGGGTAGCAAGCCTACTCCTCTGGGAACTGCCTCTACTCCTCTTCTGCCACCTTCTGCAAATGTGCCGGGCTTTTCTCTGGCTGGTCTTGCAGCATATGAACGTCAAATGGCTTTGAGTAAAATGGGTGGTGCACACACCCTTATGCATCAACAAGGTCAACATGCCCTAAAGCATGTAGACATGGGAATGGGTGCTACTGGGACTGGTTTCGATGCAAGGTTCCAGAATGTTGCAACCACCCAACACCTAGTGTACTATCAGTAA 1227 0.454 MQPQRLRQHAMLQPSLYHHPALLTPPQIEPILSGNLPPGFDSSSCRSVYVGNIHPQVTDSLLQELFSTAGALEGCKLIRKEKSSYGFVDYFDRSSAAFAIVTLNGRNIFGQPIKVNWAYASSQREDTSGHFNIFVGDLSPEVTDATLYACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGASASDEKQSSDSKIVVESTNGSSEEGQETTNDDTPEKNPQYTTVYAVKLQVTSVDLHQHFHSLNAGIIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNARILFGKPIKCSWGSKPTPLGTASTPLLPPSANVPGFSLAGLAAYERQMALSKMGGAHTLMHQQGQHALKHVDMGMGATGTGFDARFQNVATTQHLVYYQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00921 408 Gene3D - 39 125 IPR012677 -
Gma13g00921 408 Gene3D - 228 328 IPR012677 -
Gma13g00921 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Gma13g00921 408 MobiDBLite consensus disorder prediction 209 249 - -
Gma13g00921 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 324 IPR000504 GO:0003723
Gma13g00921 408 PANTHER NUCLEOLYSIN TIAR-LIKE PROTEIN 2 403 - -
Gma13g00921 408 SUPERFAMILY RNA-binding domain, RBD 124 217 IPR035979 GO:0003676
Gma13g00921 408 CDD RRM1_TIA1_like 48 118 - -
Gma13g00921 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 133 203 IPR000504 GO:0003723
Gma13g00921 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 261 318 IPR000504 GO:0003723
Gma13g00921 408 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 114 IPR000504 GO:0003723
Gma13g00921 408 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 131 209 IPR000504 GO:0003723
Gma13g00921 408 SMART rrm1_1 47 116 IPR000504 GO:0003723
Gma13g00921 408 SMART rrm1_1 132 205 IPR000504 GO:0003723
Gma13g00921 408 SMART rrm1_1 253 320 IPR000504 GO:0003723
Gma13g00921 408 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 2 403 - -
Gma13g00921 408 SUPERFAMILY RNA-binding domain, RBD 35 124 IPR035979 GO:0003676
Gma13g00921 408 SUPERFAMILY RNA-binding domain, RBD 242 326 IPR035979 GO:0003676
Gma13g00921 408 Gene3D - 126 223 IPR012677 -
Gma13g00921 408 CDD RRM2_PUB1 132 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00921 Gma-Chr13 23357994 23361870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00921 47 324 Eukaryotic Initiation Factors Gene Family AT2G23350 30.450 5.85e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00921 K13201 - gmx:100803322 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00921 13 23357994 23361870 Gma13g00921 13 23357994 23361870 ECH
Gma17g00448 17 3675641 3680970 Gma13g00921 13 23357994 23361870 GST