Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00908 ATGGGATCGAGCTTCTCTAGTTGTTATGAGGGTGAGTCTGTGTCACCTTCTCCGAAGCCAACCAAAGTGGTGGCTACAAAGGGTGGTTCTTCTTCCAACAGGGTCTCTATAACGGACTTGAGTTTCCCTGGCTCAACGCTTTCGGAGGATCTCTCCGTTTCTCTAGTGGGGTCTAACCTGCATGTGTTTTCGCTCTCGGAGCTCAAGATCATCACGCAGAGTTTCTCTTCGAGTAATTTTCTCGGCGAAGGAGGTTTCGGACCCGTGCACAAGGGCTTCATTGATGACAAGCTTAGGCCTGGTCTCGAGGCTCAACCGGTGGCCGTCAAGCTCTTGGACTTGGACGGTTCTCAGGGCCATAAAGAGTGGTTGACTGAAGTTGTGTTTCTGGGTCAACTAAGGCATCCACATCTGGTGAAGCTGATTGGATATTGCTGTGAAGAAGAACACAGGCTTCTGGTATATGAGTATTTACCACGAGGCAGCTTAGAGAATCAACTATTTAGAAGATATACAGCATCGTTACCATGGTCAACAAGGATGAAAATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCGAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCGGATTATAATGCAAAGCTTTCTGATTTTGGCTTGGCAAAAGATGGTCCCGAAGGAGATGACACACACGTTTCAACTAGAGTCATGGGCACACAAGGCTATGCGGCCCCAGAATACATCATGACAGGACACTTGACAGCAATGagtgatgtgtacagttttggagttgtgctcttggagcttctaacaggaagaaggtcagtggacaaagggcgccCACAAAGAGAACAGAACCTCGTGGAATGGGCCAGGCCTGCTTTGAATGATTCCCGGAAACTTGGCAGAATAATGGATCCAAGGCTTGAGGGTCAGTATTCTGAGGTTGGGGCGAGAAAAGCAGCTGCATTGGCTTACCAATGCCTCAGCCACAGGCCAAGGAGTAGACCCTTAATGAGCACTGTGGTTAATGTTCTTGAGCCACTTCAGGACTTTGATGATGTTCCAATTGGACCCTTTGTTTACACTGTTCCAGCTGAACAACACAATGAAGTGGCAAAAGAGAGTGAAACACCTAAGGAGAGGAAGAGGGAAAATGATcatcatcatcataatcggcatcatcatcatcatcgCCACAATGGCCATAGGCATCATCCACTTAAATCTCCCAAGACACCAATGTCATCAGATCAGTCACAGAATGATGAACACCGAAATGGTAGAAGAAGTGGGTCTAATTCACCTGACACATCCAATGCATCAGAAGCGCAATGA 1356 0.4307 MGSSFSSCYEGESVSPSPKPTKVVATKGGSSSNRVSITDLSFPGSTLSEDLSVSLVGSNLHVFSLSELKIITQSFSSSNFLGEGGFGPVHKGFIDDKLRPGLEAQPVAVKLLDLDGSQGHKEWLTEVVFLGQLRHPHLVKLIGYCCEEEHRLLVYEYLPRGSLENQLFRRYTASLPWSTRMKIAAGAAKGLAFLHEAKKPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYIMTGHLTAMSDVYSFGVVLLELLTGRRSVDKGRPQREQNLVEWARPALNDSRKLGRIMDPRLEGQYSEVGARKAAALAYQCLSHRPRSRPLMSTVVNVLEPLQDFDDVPIGPFVYTVPAEQHNEVAKESETPKERKRENDHHHHNRHHHHHRHNGHRHHPLKSPKTPMSSDQSQNDEHRNGRRSGSNSPDTSNASEAQ 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00908 451 MobiDBLite consensus disorder prediction 372 451 - -
Gma13g00908 451 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Gma13g00908 451 Pfam Protein tyrosine and serine/threonine kinase 79 351 IPR001245 GO:0004672|GO:0006468
Gma13g00908 451 SUPERFAMILY Protein kinase-like (PK-like) 50 353 IPR011009 -
Gma13g00908 451 Gene3D Phosphorylase Kinase; domain 1 44 157 - -
Gma13g00908 451 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 21 408 - -
Gma13g00908 451 ProSiteProfiles Protein kinase domain profile. 75 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00908 451 PANTHER OS01G0588500 PROTEIN-RELATED 21 408 - -
Gma13g00908 451 MobiDBLite consensus disorder prediction 1 31 - -
Gma13g00908 451 Gene3D Transferase(Phosphotransferase) domain 1 158 361 - -
Gma13g00908 451 MobiDBLite consensus disorder prediction 392 416 - -
Gma13g00908 451 CDD STKc_IRAK 81 355 - -
Gma13g00908 451 MobiDBLite consensus disorder prediction 376 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00908 Gma-Chr13 23232630 23235097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00908 61 390 Glycoside Hydrolase AT3G07070 51.198 1.02e-103 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gma13g00908 PK_Tyr_Ser-Thr 2.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00908 - - gmx:100799411 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00908 13 23232630 23235097 Gma13g00908 13 23232630 23235097 ECH
Gma17g00460 17 3792470 3795039 Gma13g00908 13 23232630 23235097 GST
Gma13g00908 13 23232630 23235097 Gma15g01660 15 17195070 17198705 PCT
Gma13g00908 13 23232630 23235097 Gma09g00640 09 7260471 7264012 PCT
Gma15g01660 15 17195070 17198705 Gma13g00908 13 23232630 23235097 PCT
Gma09g00640 09 7260471 7264012 Gma13g00908 13 23232630 23235097 PCT