Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00896 ATGAATGGAAGGAACGTTAACACAAACAGGTTCCCTTTCACTCCTTCCCAGTGGCAAGAGCTTGAACACCAAGCTCTCATCTACAAATACATGGCTTCAGGTATCTCCATCCCCCCTGACCTTCTCTTCACCATCAAAAGAACAACCCACTTGGACTCCTCAAGACTATTGCCTCACCACCCTCAACACTTTGGATGGAACTATTTGCCAATGGGGTTGGGGAGGAAAATAGACCCGGAGCCAGGGAGGTGTAGAAGAACAGATGGAAAGAAATGGAGGTGCTCAAAGGAGGCGTATCCAGATTCAAAGTACTGTGAGAGGCACATGCACAGAGGGAAAAATCGTTCAAGAAAGCCTGTGGAAGTTTTGAAAACAACACCAACGACAGCAGCAGTGGCAACAAACACAGATGCCTCAACCCCAACAACAATCTTATCAATCACCAAAAACAGTCCTGCACATGCACTCTCCCCAACCACTCATTCTCTCTCTCATGACACTTACCATCATCATCATCATCACCCTCACCCTCAGCAACATTCCTCCCACTCCTTCCTCTATCATCATTCTTCGAGGCCCTCTTCCGGTGCTGCTTTGTCATTTCAAGACAACAGTGCCCCCTTGTTTCTCGACACTGCTTCTTGCTCTCAGAATAACAACAACACTGACTGCAGGAACAGGTATGTGTATGGACTGAAGGAGGAGGTGGACGAGCATGCCTTCTTCACAGAACCTTCTGGAACTATGAGAAGCTTCTCTGCTTCCTCAATGGAAGATTCATGGCAACTCACACCACTGACTATAAGCTCCTCTTCCTCTTCGAAACAGAGGAACTGCTCTGGTTTATCCAATGACAACAACGAGTACTCCTACTTGCAACTTCAGAGCCTCAATGGCAACAACTCAAAACAGCCACAACAAGATCAAGGTTGCTACATATCAGGCAGTGATGTCAAGTGCGAAACATTCATGAAACTTGGGAAAGAAGAACCTCAGAAAACCGTTCATCGCTTCTTCGATGAATGGCCCCCTAAAAGCAGAGGATCGTGGCTTGATTTGGATGATAAATCATCCACCACCCAGCTTTCAATTTCCATTCCAACTTCTACTCATGATTTTGCAACTTTCAATTCAACAACCCAACGAGATGGTTGA 1155 0.4615 MNGRNVNTNRFPFTPSQWQELEHQALIYKYMASGISIPPDLLFTIKRTTHLDSSRLLPHHPQHFGWNYLPMGLGRKIDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGKNRSRKPVEVLKTTPTTAAVATNTDASTPTTILSITKNSPAHALSPTTHSLSHDTYHHHHHHPHPQQHSSHSFLYHHSSRPSSGAALSFQDNSAPLFLDTASCSQNNNNTDCRNRYVYGLKEEVDEHAFFTEPSGTMRSFSASSMEDSWQLTPLTISSSSSSKQRNCSGLSNDNNEYSYLQLQSLNGNNSKQPQQDQGCYISGSDVKCETFMKLGKEEPQKTVHRFFDEWPPKSRGSWLDLDDKSSTTQLSISIPTSTHDFATFNSTTQRDG 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00896 384 Pfam QLQ 12 45 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma13g00896 384 ProSiteProfiles QLQ domain profile. 12 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma13g00896 384 MobiDBLite consensus disorder prediction 152 190 - -
Gma13g00896 384 SMART QLQ_2 11 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Gma13g00896 384 PANTHER - 5 360 IPR031137 GO:0005634|GO:0006351|GO:0032502
Gma13g00896 384 Pfam WRC 79 121 IPR014977 -
Gma13g00896 384 MobiDBLite consensus disorder prediction 109 137 - -
Gma13g00896 384 ProSiteProfiles WRC domain profile. 78 122 IPR014977 -
Gma13g00896 384 MobiDBLite consensus disorder prediction 121 137 - -
Gma13g00896 384 PANTHER GROWTH-REGULATING FACTOR 5 5 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00896 Gma-Chr13 23134795 23136685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00896 3 121 GRF Transcription Factor Family AT3G13960 67.213 9.57e-53 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Gma13g00896 WRC 8.2e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00896 - - gmx:100783524 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00896 13 23134795 23136685 Gma13g00896 13 23134795 23136685 ECH
Gma17g00473 17 3893586 3895572 Gma13g00896 13 23134795 23136685 GST
Gma13g00896 13 23134795 23136685 Gma15g01646 15 16998359 17000758 PCT
Gma13g00896 13 23134795 23136685 Gma09g00629 09 7094053 7096039 PCT
Gma15g01646 15 16998359 17000758 Gma13g00896 13 23134795 23136685 PCT
Gma09g00629 09 7094053 7096039 Gma13g00896 13 23134795 23136685 PCT