Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00887 ATGGGTGATTTCCAAGGCCCCTTCATAGTGTCACCCCCTCCTTCACTCTCTTCCTCGGATAAGTCCAGCACAACCATGCTATACTATGGGTTAGTAGTGGTGGGGGTTGCAGCCATGGCATTAGCCCTATACAACTTCGTCATCATCAAGCGAAGTAGAAGGCGCCATATGCAATCACAGGCTGAAGGGGCAAATGGGTTGGTGGAGGTGGCGATGGAAAGTAGTAGAATTGAGAACTGCCAAAGGAACAACTTCAACTTGCTCTCAAGCTTCAAGTACAAGAAAGAAGCAGCAAAAGAAGGAAGTGGAGATGGTGATTATGATTATGATGATgaatgcccagtttgcttatcgggttttgaagaaggggaagaagtgaggaagctgccacggtgcaagcactggttccacgcaccatgcatagacatgtggctctactcccatttcgattgtccaatttgtcgaacaccTGTTGGGCAATTCTACCACCGTTTCCATTCTGGTCCGGAGTTGCTGGAATCCGGTGGTGGCGTCTCCGTATGA 543 0.361 MGDFQGPFIVSPPPSLSSSDKSSTTMLYYGLVVVGVAAMALALYNFVIIKRSRRRHMQSQAEGANGLVEVAMESSRIENCQRNNFNLLSSFKYKKEAAKEGSGDGDYDYDDECPVCLSGFEEGEEVRKLPRCKHWFHAPCIDMWLYSHFDCPICRTPVGQFYHRFHSGPELLESGGGVSV 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00887 180 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Gma13g00887 180 PANTHER RING-H2 FINGER PROTEIN ATL52-LIKE 11 163 - -
Gma13g00887 180 Pfam Ring finger domain 111 155 IPR001841 -
Gma13g00887 180 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 159 IPR013083 -
Gma13g00887 180 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 11 163 IPR044675 -
Gma13g00887 180 SUPERFAMILY RING/U-box 108 161 - -
Gma13g00887 180 SMART ring_2 113 154 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00887 Gma-Chr13 23079605 23080948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00887 30 158 C3H Transcription Factor Family AT5G17600 39.535 1.42e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00887 - - gmx:102668213 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00887 13 23079605 23080948 Gma13g00887 13 23079605 23080948 ECH
Gma17g00479 17 3941263 3947833 Gma13g00887 13 23079605 23080948 GST
Gma13g00887 13 23079605 23080948 Gma15g01626 15 16204508 16205083 PCT
Gma15g01626 15 16204508 16205083 Gma13g00887 13 23079605 23080948 PCT