Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00884 ATGCTTACGTGCATAGCTCGTCCAAAGAAACCTGATGAGTCGGATCCAAACAACGCGACAAGCGCCGCTAAATCGCAAGCCGTCAAATCTCTCACTTCTCAGATAAGGGATATGGCGCTGAAGGCTTCGGGAGCGTACAAGCATTGCGCACCGTGCACGGGGCCAGCGACGCAGGGGCGATTTCGGAGCAACACCACCGAGTCGGACGCGGATTCGGACCGGTTCCGGTGGTCGTACCGGAGAACGGGGAGTTCGAGCTCGACGACGACAAGGACGTGGGGGAAGGAGATGGAGGCGCGGCTGAAGGGGATTTCGAGCGGGGAGGGGACGCCGAACTCCGCCAGCGGGAGGCGGGCGGAGCCGGTGGTGCTGTTTGTTGAAGAGAACGAGCCGAAGGAGTGGGTGGCGCAGGTGGAGCCTGGCGTTTTGATTACGTTCGTTTCGTTGCCACGTGGCGGGAACGATCTGAAGCGCATACGGTTCAGTCGAGAGATGTTCAATAAATGGCAAGCTCAAAGGTGGTGGGCAGAGAACTACGACAAAGTTATGGAACTTTACAATGTTCAAAGGTTTAACCGCCAAGCATTTCCTCTTCCAACGCCACCAAGATCTGAAGATGAGAGCTCAAAGCTTGAATCAGCTGAAGAAAGCCCCGTAACACCTCCACTGAACAGGGAACGGTTACCTCGTAATATGTACCGTCCAACAGGAATGGGAATGGGATACTCATCCTCAGATTCCTTTGATCATCAGTCAATGCAATCTCGGCATTTCTATGACTCAAATGGTATGAACTCAACACCGAAAGTGTCCACCATTAGTGCGGCCAAAACGGAGATATCATCAATGGATGCTTCTATCAGAAGTAGCTCATCGAGAGAGGCTGATCGCTCCGGTGATTTTTCAATCAGCAATGCTAGTGATTTGGAGACTGAATGGGTTGAACAGGATGAACCTGGGGTTTACATTACGATCAGAGCATTGCCAGGTGGTGCAAGAGAGCTCAAACGAGTCAGGTTCAGCCGAGAAAAATTTGGGGAGATGCATGCTAGATTATGGTGGGAAGAGAACCGTGCCAGAATACATGAACAATACTTGTGA 1101 0.5204 MLTCIARPKKPDESDPNNATSAAKSQAVKSLTSQIRDMALKASGAYKHCAPCTGPATQGRFRSNTTESDADSDRFRWSYRRTGSSSSTTTRTWGKEMEARLKGISSGEGTPNSASGRRAEPVVLFVEENEPKEWVAQVEPGVLITFVSLPRGGNDLKRIRFSREMFNKWQAQRWWAENYDKVMELYNVQRFNRQAFPLPTPPRSEDESSKLESAEESPVTPPLNRERLPRNMYRPTGMGMGYSSSDSFDHQSMQSRHFYDSNGMNSTPKVSTISAAKTEISSMDASIRSSSSREADRSGDFSISNASDLETEWVEQDEPGVYITIRALPGGARELKRVRFSREKFGEMHARLWWEENRARIHEQYL 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00884 366 ProSiteProfiles BRX domain profile. 132 187 IPR013591 -
Gma13g00884 366 ProSiteProfiles BRX domain profile. 311 366 IPR013591 -
Gma13g00884 366 MobiDBLite consensus disorder prediction 195 249 - -
Gma13g00884 366 PANTHER PROTEIN BREVIS RADIX-LIKE 4 1 366 - -
Gma13g00884 366 MobiDBLite consensus disorder prediction 1 28 - -
Gma13g00884 366 Pfam Transcription factor BRX N-terminal domain 20 52 IPR027988 -
Gma13g00884 366 Pfam Transcription factor regulating root and shoot growth via Pin3 132 186 IPR013591 -
Gma13g00884 366 Pfam Transcription factor regulating root and shoot growth via Pin3 310 365 IPR013591 -
Gma13g00884 366 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 366 IPR044532 -
Gma13g00884 366 MobiDBLite consensus disorder prediction 47 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00884 Gma-Chr13 23053397 23058763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00884 1 366 Major Intrinsic Protein MIP AT1G31880 44.845 5.42e-94 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00884 - - gmx:100794109 704.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00884 13 23053397 23058763 Gma13g00884 13 23053397 23058763 ECH
Gma17g00482 17 3964213 3969029 Gma13g00884 13 23053397 23058763 GST
Gma13g00884 13 23053397 23058763 Gma15g01624 15 16118282 16126070 PCT
Gma15g01624 15 16118282 16126070 Gma13g00884 13 23053397 23058763 PCT