Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00881 ATGAAGCCATTCTTGTTGAGTCATCCTGATACTATGTACAATTGTTCTCAAGTTTATTGTAGTCATTCACTGGCTCATACTTCTTATCCTTGTGGTGATCCTTATTTTGGTAGTTCAATAGTTGCTTATGGAACACAGGCTATTACTCAACAAATGGTGCCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTTGAGCTTGCAGAAGATGGGCCCATTTATGTCAATGCCAAACAATACCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTTAAGGCTCAAAACAAACTCATCAAAAGTCGTAAGCCATATCTTCATGAGTCTCGGCACCGCCACGCATTGAAAAGGGTTAGGGGAACTGGGGGGCGCTTTCTTAGTGCCAAACAGCTTCAACAGTTTAATGCAGAACTTGTCACCGATGCCCATTCAGGCCCGGGCCCTGTCAATGTTTATCAAAAGAAAGATGCATCTGAGGCAGAAAGTCATCCCTCAAGAACTGGAAAAAATGCATCTATCACATTCACAGCAATCTCTGGCTTGACAAGTATGTCCGGTAACAGTGTCAGTTTCAGGCGGCCTGAGCACAACTTCTTGGGGAACTCTCCTAATATAGGTGGATCGTCGCAATGCAGTGGGGGACTCACCTTTGGTGGTGGAGCTCGGCAATGTACTTCAGTTGGCCGGTGA 702 0.4573 MKPFLLSHPDTMYNCSQVYCSHSLAHTSYPCGDPYFGSSIVAYGTQAITQQMVPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLKAQNKLIKSRKPYLHESRHRHALKRVRGTGGRFLSAKQLQQFNAELVTDAHSGPGPVNVYQKKDASEAESHPSRTGKNASITFTAISGLTSMSGNSVSFRRPEHNFLGNSPNIGGSSQCSGGLTFGGGARQCTSVGR 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00881 233 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR 1 227 - -
Gma13g00881 233 Gene3D - 72 134 - -
Gma13g00881 233 SMART cbf3 71 132 IPR001289 GO:0003700|GO:0006355
Gma13g00881 233 ProSiteProfiles NF-YA/HAP2 family profile. 72 132 IPR001289 GO:0003700|GO:0006355
Gma13g00881 233 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 227 IPR001289 GO:0003700|GO:0006355
Gma13g00881 233 PRINTS CCAAT-binding transcription factor subunit B signature 75 97 IPR001289 GO:0003700|GO:0006355
Gma13g00881 233 PRINTS CCAAT-binding transcription factor subunit B signature 106 129 IPR001289 GO:0003700|GO:0006355
Gma13g00881 233 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 75 129 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00881 Gma-Chr13 23027566 23032781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00881 16 137 CCAAT-HAP2 Transcription Factor Family AT1G17590 56.098 1.18e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Gma13g00881 CBFB_NFYA 2.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00881 K08064 - gmx:100792905 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00881 13 23027566 23032781 Gma13g00881 13 23027566 23032781 ECH
Gma17g00484 17 3984346 3989094 Gma13g00881 13 23027566 23032781 GST