Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00873 ATGGTTTGGTTTCAATGCGAAGATTGCGGAGACAACCTCAAAAAACCCAAGTTGTCTAGTCACTTCCGAACTTGCTCTGCCTACAAATTGTCGTGCATTGACTGTGGGGAAATATTTGGGCGTGACACCGTTCAGGATCACACGCAGTGTATCACAGAAGCGGAGAAATATGGACCAAAAGGCCAAGGCAAAACTTTGAACGTTGCAACTGCAAACCCTAATAAGGATAGCAAACAAAGGCCCGACATTGATATTAATGTGGGGTTATCTGACCGGCCTCCTTGGTTCTGTAGTCTTTGCAATACGAAAGCTACAAGTAAGCAAACACTTCTTCTCCATGCTGATGGAAAGAAACACAGGGCAAAGGCTAGAGCATTCCATGCTTCAAAGCAACAACCAGTTGAGGCAGACAAATCTACCACTGATGCAAAGGTTGCTGTGGAGACTGCTCCTAATGATGATGTGAGAGATGGCAAAAATGGAGGGCTGCCAAAATTGCAAGAATCTTCTGAACAAAATAACTCAAAACCAGGGAATGAAATTTCATCAGCAAAGAAAAAGAGGAAACTTGAAGCATTGGAGGATGACCGTATTAAGAAAACCAAGAATGACACTTCAGTTGACATGGGAAATGGAGAAGTAATTCAGGGTGAGGAAGCAACAGGAGAGAGCAATTTGAAGAAAGAACGGAGTGCTGTCAAAAATAAAATTAAATGGAAGAAGTTCATCAAATCAGCCTTGAAATCTCATCCTGATAGAATTTTGAAGATGAAGAAACTGAGAAAAGTTGTCCTCAGAGCACTGCAGGAATGTGGCATTGTAGTGGATGACACTGAATTGAGTGAGGCGCTTGAGCAGAAGATCAATTCCAGCTCTAGATTTGCAGTTGAGAACAAGTATGTGCGATTGCTGGCCAAAGATTGA 924 0.4242 MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQDHTQCITEAEKYGPKGQGKTLNVATANPNKDSKQRPDIDINVGLSDRPPWFCSLCNTKATSKQTLLLHADGKKHRAKARAFHASKQQPVEADKSTTDAKVAVETAPNDDVRDGKNGGLPKLQESSEQNNSKPGNEISSAKKKRKLEALEDDRIKKTKNDTSVDMGNGEVIQGEEATGESNLKKERSAVKNKIKWKKFIKSALKSHPDRILKMKKLRKVVLRALQECGIVVDDTELSEALEQKINSSSRFAVENKYVRLLAKD 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00873 307 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 304 IPR039999 GO:0003677
Gma13g00873 307 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Gma13g00873 307 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Gma13g00873 307 SUPERFAMILY beta-beta-alpha zinc fingers 90 127 IPR036236 -
Gma13g00873 307 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Gma13g00873 307 MobiDBLite consensus disorder prediction 181 206 - -
Gma13g00873 307 MobiDBLite consensus disorder prediction 165 180 - -
Gma13g00873 307 Pfam Zinc-finger of C2H2 type 95 119 - -
Gma13g00873 307 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Gma13g00873 307 SMART ZnF_U1_5 92 126 IPR003604 GO:0003676|GO:0008270
Gma13g00873 307 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Gma13g00873 307 Gene3D - 1 50 - -
Gma13g00873 307 MobiDBLite consensus disorder prediction 122 210 - -
Gma13g00873 307 Gene3D Classic Zinc Finger 89 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00873 Gma-Chr13 22973711 22976099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00873 1 246 C2H2 Transcription Factor Family AT2G19380 32.609 4.36e-43 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00873 K15263 - gmx:100790272 597.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00873 13 22973711 22976099 Gma13g00873 13 22973711 22976099 ECH
Gma17g00493 17 4041186 4048035 Gma13g00873 13 22973711 22976099 GST