Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00871 ATGAAGAAAGGAAACTTGGGACTTGGTCTCAAACTCTCAGTTCCTGTGTCTGATCAATCTAATTTTGCCAGGTTCCTGACTGAAAGTGGGACTTTTAAGGATGGGGATCTGCTTGTCAACAGGGATGGAGTTCGAATTGTCTCTCAGAATGATGTCGAAGCTCCACCTCCAATCAAGCCTACAGACAACCAGTTAACTTTGGCAGACATAGATGTAATCAAAGTTGTTGGAAAGGGAAATGGAGGGGTAGTTCAATTGGTGCAACACAAATGGACTAGTCAGTTTTTTGCGTTGAAGGTAATTCAGATGAATATTGAGGAGTCTATGCGCAAGCAGATTGCACAAGAGCTGAAAATTAATCAACAAGCACAATGTCCTTATGTTGTTGTCTGCTACCAATCATTCTATGAAAACGGTGTCATATCAATCATCTTAGAGTACATGGATGGAGGTTCCTTAGCTGATCTGCTGAAGAAAGTTAAAACAATTCCAGAGGATTATCTTGCTGCCATCTGTAAGCAGGTGCTGAAGGGTTTAGTTTATCTCCACCACGAAAAGCATATTATCCACAGAGACTTAAAACCTTCTAATTTGTTAATAAATCATATTGGTGAAGTAAAGATTACTGACTTTGGTGTGAGTGCAATTATGGAAAGTACATCTGGTCAAGCAAATACTTTCATTGGAACCTACAACTATATGTCTCCAGAGAGAATCAATGGAAGCCAGCGAGGCTACAACTACAAAAGTGATATATGGAGTTTGGGACTAATATTACTTGAGTGTGCTTTGGGTCGGTTTCCATATGCACCGCCTGATCAAAGTGAAACATGGGAAAGCATTTTTGAGCTTATTGAAACCATTGTCGATAAACCTCCTCCTATCCCTCCTTCTGAACAATTTTCTACAGAATTTTGCTCATTTATCTCAGCATGTCTACAGAAAGACCCAAAGGATCGACTGTCAGCTCAGGAATTAATGGCACATCCTTTTGTCAACATGTATGATGACTTGGAGGTGGATCTTTCAGCTTACTTCTCAAATGCAGGATCTCCTCTTGCAACCTTATAA 1071 0.4006 MKKGNLGLGLKLSVPVSDQSNFARFLTESGTFKDGDLLVNRDGVRIVSQNDVEAPPPIKPTDNQLTLADIDVIKVVGKGNGGVVQLVQHKWTSQFFALKVIQMNIEESMRKQIAQELKINQQAQCPYVVVCYQSFYENGVISIILEYMDGGSLADLLKKVKTIPEDYLAAICKQVLKGLVYLHHEKHIIHRDLKPSNLLINHIGEVKITDFGVSAIMESTSGQANTFIGTYNYMSPERINGSQRGYNYKSDIWSLGLILLECALGRFPYAPPDQSETWESIFELIETIVDKPPPIPPSEQFSTEFCSFISACLQKDPKDRLSAQELMAHPFVNMYDDLEVDLSAYFSNAGSPLATL 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00871 356 ProSiteProfiles Protein kinase domain profile. 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00871 356 CDD PKc_MAPKK_plant_like 85 336 - -
Gma13g00871 356 ProSitePatterns Protein kinases ATP-binding region signature. 76 99 IPR017441 GO:0005524
Gma13g00871 356 PANTHER MAP KINASE KINASE 1 356 - -
Gma13g00871 356 SUPERFAMILY Protein kinase-like (PK-like) 64 339 IPR011009 -
Gma13g00871 356 Gene3D Phosphorylase Kinase; domain 1 47 149 - -
Gma13g00871 356 ProSitePatterns Serine/Threonine protein kinases active-site signature. 188 200 IPR008271 GO:0004672|GO:0006468
Gma13g00871 356 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 1 356 - -
Gma13g00871 356 SMART serkin_6 70 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00871 356 Pfam Protein kinase domain 72 332 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00871 356 Gene3D Transferase(Phosphotransferase) domain 1 150 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00871 Gma-Chr13 22918740 22924036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00871 1 327 MAP Kinase Kinase Gene Family AT4G29810 67.560 6.23e-172 480
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Gma13g00871 Pkinase 3.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00871 K20603 - gmx:100789734 697.582
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00871 13 22918740 22924036 Gma13g00871 13 22918740 22924036 ECH
Gma17g00495 17 4055042 4059674 Gma13g00871 13 22918740 22924036 GST
Gma13g00871 13 22918740 22924036 Gma15g01615 15 15982117 15987448 PCT
Gma13g00871 13 22918740 22924036 Gma09g00605 09 6680925 6694303 PCT
Gma15g01615 15 15982117 15987448 Gma13g00871 13 22918740 22924036 PCT
Gma09g00605 09 6680925 6694303 Gma13g00871 13 22918740 22924036 PCT