Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00870 ATGGAGGAAATATCTTCTAGTGTTGCAGTACCTTTTACACTTGGTGTTGGAAATTTGATTCAAAAGGAGTCTGCAGTGACCACTCACATGGAGATAACTGGGCTGAAGCTTATGGCAAATACAGCAGCTGCTGCTTTGATGTTAAATCCGGCAGTGGAGTGTTTAAAGGAGAATCAAGTTGGAGCTGCTCTTGTTTCAGAAATGGTTATTGAATGTGAGAGTAATTGGGTCTTGAATGAAGGCCTTAACCAGGCAAGAAAGGAAGATGAATTAATGTTAGCAGTGGATTTTCAGTGTCTGCATAGTTCAAGCTCTCAATCTGTGGCTAATGGCAAAAGTGATCCTTGTAGGGAGGAAGCTGCGTTGTGGAAGAGTAGCTTTTCTGAAATAGATTCACCAATCATCATTAAGGTGGATGATGATGTTGATGGTAAGTCTGGAATAAGCAAGCTGTGTCCATCAACGAAGCTAGTGGAGGACACAGTTTGTTTTGCTATGGATATTACTAACGAGGATCAAAGTGGATCAGATGAGTCTGATCCTAGACCATCCGCTGTGCTTCTTGATCAGTTGCCAGGGGAGAATAAAACATGGAGAACAAGCAACCCGAATGCTTTGAAATTGAATAGTGGCCCTCTCTGGGGTTGTTCATCAATTTGTGGAATGAGACAGGAGATGGAAGATGCTATTTCTGTTAGACCTCAACTTTTTCAAGTTTCTTCACAGATGTTGATTAATGACCATGTGAATGAGAATGGAAAACAGTCACTAGCCCACTTTTTTGCTGTCTACGATGGACATGGGGGCCTTCAGGTTGCCAATTACTGCCAGGAACGTCTTCATTCAACGTTGATTGAGGAGATAGAGACTGCACAATCAAGTTCGGCTGAAACAAATGGGAGAGATGATTGGCAGGACCAATGGAAGAAAGCATTCATCAATTGTTTTCAGAAAATGGATGATGAGGTTGGAGGAATTGGTGCAAGTAACAAAGGAAACAACAGTGGTGGGTCTGAGTCTAATATTGAAACTGTTGCTCCTGAGACTGCTGGCTCCACTGCAGCGGTTGCCATTTTAAGCCAAACCCACATCATAGTTGCAAATTGTGGAGATTCAAGAACTGTCTTATACCGTGGAAAAGAAGCCATGCCATTGTCTTCTGACCACAAACCAAATAGAGAGGATGAGCGGGCTCGGATAGAAGCTGCGGGAGGAAGAGTCATACATTGGAAAGGATATCGAGTTCTTGGTGTCTTGGCGATGTCAAGGTCCATAGGTGATAGATACCTGAAACCATGGATAATTCCAGAACCTGAAGTCAATATTGTGCGTCGAGAAAAAAATGATCAGTGTCTTATTCTAGCAAGTGATGGTTTATGGGATGTAATGACAAATGAAGAAGCATGCGAGGTTGCAAAGAAGCGAATCCTTCTTTGGCACAAGAAGTATGGTGACAACGGCACAACAGGACGCAGTGAAGGAGCGGATCCTGCAGCTCAGTCAGCTGCAGAGTATCTAACTAAGCTTGCCATCCACAGGGGAAGCCAAGATAACATCTCTGTAATTGTGATAGACTTAAAGGCTCAAAGAAAAATTAAGAGAAAGCCATAA 1611 0.4289 MEEISSSVAVPFTLGVGNLIQKESAVTTHMEITGLKLMANTAAAALMLNPAVECLKENQVGAALVSEMVIECESNWVLNEGLNQARKEDELMLAVDFQCLHSSSSQSVANGKSDPCREEAALWKSSFSEIDSPIIIKVDDDVDGKSGISKLCPSTKLVEDTVCFAMDITNEDQSGSDESDPRPSAVLLDQLPGENKTWRTSNPNALKLNSGPLWGCSSICGMRQEMEDAISVRPQLFQVSSQMLINDHVNENGKQSLAHFFAVYDGHGGLQVANYCQERLHSTLIEEIETAQSSSAETNGRDDWQDQWKKAFINCFQKMDDEVGGIGASNKGNNSGGSESNIETVAPETAGSTAAVAILSQTHIIVANCGDSRTVLYRGKEAMPLSSDHKPNREDERARIEAAGGRVIHWKGYRVLGVLAMSRSIGDRYLKPWIIPEPEVNIVRREKNDQCLILASDGLWDVMTNEEACEVAKKRILLWHKKYGDNGTTGRSEGADPAAQSAAEYLTKLAIHRGSQDNISVIVIDLKAQRKIKRKP 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00870 536 CDD PP2Cc 215 526 IPR001932 -
Gma13g00870 536 PANTHER ALPHABET, ISOFORM E-RELATED 83 536 - -
Gma13g00870 536 Pfam Protein phosphatase 2C 236 519 IPR001932 -
Gma13g00870 536 ProSitePatterns PPM-type phosphatase domain signature. 260 268 IPR000222 GO:0043169
Gma13g00870 536 Gene3D - 202 536 IPR036457 -
Gma13g00870 536 ProSiteProfiles PPM-type phosphatase domain profile. 213 526 IPR001932 -
Gma13g00870 536 SUPERFAMILY PP2C-like 210 527 IPR036457 -
Gma13g00870 536 PANTHER PROTEIN PHOSPHATASE 2C ABI2-LIKE PROTEIN 83 536 - -
Gma13g00870 536 SMART PP2C_4 203 524 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00870 Gma-Chr13 22916183 22918512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00870 199 536 PP2C-type Phosphatase Gene Family AT4G26080 58.430 8.05e-135 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00870 K14497 - gmx:100789207 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00870 13 22916183 22918512 Gma13g00870 13 22916183 22918512 ECH
Gma17g00496 17 4060218 4063782 Gma13g00870 13 22916183 22918512 GST
Gma13g00870 13 22916183 22918512 Gma15g01614 15 15978733 15981338 PCT
Gma13g00870 13 22916183 22918512 Gma09g00603 09 6675535 6678141 PCT
Gma15g01614 15 15978733 15981338 Gma13g00870 13 22916183 22918512 PCT
Gma09g00603 09 6675535 6678141 Gma13g00870 13 22916183 22918512 PCT