Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00865 ATGCAGCAGCAGCTCATTAGATATCCCAAACTAGATGATGCAAAACTTGCAATGTATGGGACTCGAATTTCTGCTCTGTACATATTCATCTACAATTTTGCATGTATGAAGCTAAAAGGACCTGGGATACCAACTACCATTCTAAGATGTGCTCCTGACAGTTGTGTTGTATATATTGTAGCTAGAGATAGAATTATATCCAAGTTGGCTGATTTTTCATCTTCCCGTTCTTGTGTCATGCAAGAAGAAGTGGAACGGCTGCAGCTGGAGTTGCAAAATACTATCACCATGTATAAACAGGTCTGTGGAGAGCTGGTTCAAGCTCAAAACGAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAATAGTCAATGCTTCCCTAAAAAGAGAGGAGATTTTGAGAAAGTTGCCTGCTGAAGAGAAAACAAAGTATTTAAAATTTTCCAAAGAGTCATATGAAAGACAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAAAAACAGAGAATTGTGGATACATTGCTCTCAAATGACAGGAGATACAGAAAGTACACCATGGATGAAATCAAGCTAGTAACGAACTTTTTTGCTGAGGACTTGATAATTGGTGAAGGAGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACTCACCAGTAGCTGTAAAGGTTCTGCATCAAGACGCAATCAACAAGAAAGATGAGTTTCTAAAAGAGGTTGAGATTCTTAGTCAACTACATCATCCTAATATGGTATTGTTATTTGGAGCCTGTCCTGAGAGTGGTTGTCTTGTTTATGAATACAAGGAAAATGGAATTTTTGAAATGGCTTGTGGGCTCTCATTCTTGCATAATTCAAAGCCAGAGCCTATTGTCCATCGAGATATAAAACCTGGCAATGTCTTGTTAGACAGAAATTATGTGAGCAAAATTGCAGATATTGGGCTGGCTAAACTCCTTGTAGAAGTAGTGCCTGACAATGTCACTGAGTACAGAGAATCAATTCTTGCCGGTACTCTGCATTACATGGACCCAGAGTATCAGAGAACTGGCACTGTCAGACCAAAATCAGATGTATATGCTTTTGGAGTCATAACTCTCCAATTGATAACTGGTCGCCATGCACGTGGACTCATCGTGACAGTGGAATTGGCTCAAGTAGCCCTTAAATGCTCTGCACTTAGATGCAGAGATAGACCAGAAATTGATACTGAAGTTCTTCCAGTGCTTGAAAGATTTTCTGATGCGGCAAATTCTAGTACAAGGATGGGAATAAATAGTGTAAGTGTGCCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTCACTTATGAGTACATAGCAATCAAGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAACTTCAGTATTCTGTGCTGACTCCAAACCATACTTTACGTTCAGCCATTCAGGAGTGGAAGTCTGGAGTGACCTTTTGA 1518 0.3972 MQQQLIRYPKLDDAKLAMYGTRISALYIFIYNFACMKLKGPGIPTTILRCAPDSCVVYIVARDRIISKLADFSSSRSCVMQEEVERLQLELQNTITMYKQVCGELVQAQNEALLLSSESLEETKIVNASLKREEILRKLPAEEKTKYLKFSKESYERQMAELDVLKESIEKQRIVDTLLSNDRRYRKYTMDEIKLVTNFFAEDLIIGEGGYGKVYKCNLDHSPVAVKVLHQDAINKKDEFLKEVEILSQLHHPNMVLLFGACPESGCLVYEYKENGIFEMACGLSFLHNSKPEPIVHRDIKPGNVLLDRNYVSKIADIGLAKLLVEVVPDNVTEYRESILAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVTVELAQVALKCSALRCRDRPEIDTEVLPVLERFSDAANSSTRMGINSVSVPSQYYCPILQEIMDDPYIAADGFTYEYIAIKAWLSKHNVSPMTKLKLQYSVLTPNHTLRSAIQEWKSGVTF 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00865 505 PANTHER OS02G0152300 PROTEIN 385 502 - -
Gma13g00865 505 PANTHER OS02G0152300 PROTEIN 77 388 - -
Gma13g00865 505 PANTHER OS02G0152300 PROTEIN 32 75 - -
Gma13g00865 505 SUPERFAMILY RING/U-box 429 500 - -
Gma13g00865 505 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 385 502 - -
Gma13g00865 505 CDD RING-Ubox_WDSUB1_like 438 478 - -
Gma13g00865 505 SMART Ubox_2 437 499 IPR003613 GO:0004842|GO:0016567
Gma13g00865 505 ProSiteProfiles Protein kinase domain profile. 200 452 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00865 505 Pfam Protein kinase domain 204 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00865 505 SUPERFAMILY Protein kinase-like (PK-like) 183 406 IPR011009 -
Gma13g00865 505 Gene3D Transferase(Phosphotransferase) domain 1 185 276 - -
Gma13g00865 505 Gene3D Transferase(Phosphotransferase) domain 1 277 433 - -
Gma13g00865 505 Pfam U-box domain 434 500 IPR003613 GO:0004842|GO:0016567
Gma13g00865 505 ProSiteProfiles U-box domain profile. 433 505 IPR003613 GO:0004842|GO:0016567
Gma13g00865 505 ProSitePatterns Protein kinases ATP-binding region signature. 206 227 IPR017441 GO:0005524
Gma13g00865 505 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 77 388 - -
Gma13g00865 505 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 34 32 75 - -
Gma13g00865 505 SMART serkin_6 200 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00865 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 295 307 IPR008271 GO:0004672|GO:0006468
Gma13g00865 505 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 434 503 IPR013083 -
Gma13g00865 505 Coils Coil 152 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00865 Gma-Chr13 22873729 22879506 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00865 80 501 Plant U-box Gene Family AT5G57035 55.280 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Gma13g00865 Pkinase 1.1e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00865 - - gmx:100820557 812.757
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00865 13 22873729 22879506 Gma13g00865 13 22873729 22879506 ECH
Gma17g00500 17 4095802 4101347 Gma13g00865 13 22873729 22879506 GST