Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00863 ATGTGCGGCGACGCCACGAACTGGGACGAAGACGCATACAGAGAAACCGTACTCAGGGAGAGGGAAATCCAAACCCGAACCGTTTTCCGAACCGCTTGGGCCCCACCCTACACCTCTAACCTCGACACTCTCCTTGTCGCCTCTAGCGACGGTTCCGTCGCATCCTACTCCATCTCTTCCTCCGTCGTCGCCTCTAAGCTCAAAAATCCATTCGGTTTTGTCAATGCCGATACAGATGAGTTATTGGCTGAACCAAATTGCTTCGTTCAAGCGCACGCTGGACCTGCTTACGATGTCAAGTTTTATGGTGACGGCGAAGATGCTCTGTTGCTGAGCTGTGGTGATGATGGTCAGATTCGAGGATGGAGATGGAAGGAATTTTCAAGCTCAAATTATTCTGTTTCTTCCCAAGGAAATGATATCAAGCCTGTACTTGATGTGGTGAATCCTCAACACAAaggtccttggggtgcactttcacccgtcccagagaataatgctattgctgtcaatactcaggggggatctgtttttgccgcatctggtgattcttgtgcatattgttgggatgtggaaactggtaaagtgaaaatggtattcaaggggcacatggactatttgcattgtatagttgctcgcaactcatcaaatcagATCATAACAGGTTCGGAGGATGGGACAACACGAATTTGGGATTGCAAAAGTGGAAAGTGTACGCAAGTGATTGATCCAGCAAGAGATTTGAAATTAAAGGGATCTGCTTCATGGGTTGGTTGTGTTGCTTTAGATGCAAGTGAGAGCTGGTTGGCTTGCAGTAGTGGACGTAATATATCACTTTGGAACCTTCCTGCTTCAGAATGCGTATCAAAGATTCCAACTCGTGCTTGTGTACAAGACATGTCATTTGACAATAATCAAATTTTGACAGTTGGTACAGATCCTCTACTCAATCGCTTTGACATGAATGGCACTATCCTTTCACAAATACAGTGTGCTCCTTCGTCATCTTTTTCTATCTCCTTACATCCTGCAGGGGTTATGGCAGTTGGAGGTTATGGATGTCTTGTTGATGTTATCTCACAATTTGGCAGCCACATGTGCACATTTCGTTGCCAGTGTGTCTAA 1125 0.3787 MCGDATNWDEDAYRETVLREREIQTRTVFRTAWAPPYTSNLDTLLVASSDGSVASYSISSSVVASKLKNPFGFVNADTDELLAEPNCFVQAHAGPAYDVKFYGDGEDALLLSCGDDGQIRGWRWKEFSSSNYSVSSQGNDIKPVLDVVNPQHKGPWGALSPVPENNAIAVNTQGGSVFAASGDSCAYCWDVETGKVKMVFKGHMDYLHCIVARNSSNQIITGSEDGTTRIWDCKSGKCTQVIDPARDLKLKGSASWVGCVALDASESWLACSSGRNISLWNLPASECVSKIPTRACVQDMSFDNNQILTVGTDPLLNRFDMNGTILSQIQCAPSSSFSISLHPAGVMAVGGYGCLVDVISQFGSHMCTFRCQCV 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00863 374 SMART WD40_4 14 57 IPR001680 GO:0005515
Gma13g00863 374 SMART WD40_4 82 123 IPR001680 GO:0005515
Gma13g00863 374 SMART WD40_4 322 360 IPR001680 GO:0005515
Gma13g00863 374 SMART WD40_4 284 320 IPR001680 GO:0005515
Gma13g00863 374 SMART WD40_4 193 232 IPR001680 GO:0005515
Gma13g00863 374 SMART WD40_4 243 281 IPR001680 GO:0005515
Gma13g00863 374 SMART WD40_4 152 190 IPR001680 GO:0005515
Gma13g00863 374 Gene3D - 8 363 IPR015943 GO:0005515
Gma13g00863 374 ProSiteProfiles Trp-Asp (WD) repeats profile. 200 241 IPR001680 GO:0005515
Gma13g00863 374 Pfam WD domain, G-beta repeat 250 281 IPR001680 GO:0005515
Gma13g00863 374 Pfam WD domain, G-beta repeat 196 232 IPR001680 GO:0005515
Gma13g00863 374 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 200 232 - -
Gma13g00863 374 SUPERFAMILY WD40 repeat-like 33 360 IPR036322 GO:0005515
Gma13g00863 374 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 9 371 IPR042626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00863 Gma-Chr13 22855304 22863071 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00863 168 237 Eukaryotic Initiation Factors Gene Family AT2G46280 31.429 2.34e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00863 K13175 K03257 gmx:100820024 752.281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00863 13 22855304 22863071 Gma13g00863 13 22855304 22863071 ECH