Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00862 ATGGCTGGACTTGCACCTGAGGGATCACAGTTCGATGCTCGTCAATATGATTCTAAAATGAGTGACTTACTTTCATCTGATGGACAGGACTTCTTCACATCCTATGACGAGGTTTATGATAGTTTTGACGCTATGGGTTTGCAGGAAAATCTTCTCAGGGGAATTTACGCATATGGTTTTGAGAAGCCATCTGCCATTCAGCAAAGGGGGATAGTTCCCTTCTGCAAGGGACTTGATGTTATTCAGCAGGCTCAGTCTGGAACTGGGAAGACGGCTACTTTCTGCTCTGGTATTCTGCAGCAACTTGACTATAGCTTGACGCAATGCCAGGCCTTGGTTTTAGCACCAACTCGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGAGCACTTGGAGATTATCTAGGTGTGAAGGTTCATGCTTGTGTGGGAGGTACCAGTGTGCGTGAAGACCAACGCATTCTATCTAGCGGTGTTCATGTTGTGGTTGGTACCCCTGGTCGTGTGTTTGATATGCTGCGCAGACAGTCACTTCTGCCAGATCACATCAAGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCCCGAGGTTTTAAGGATCAGATCTACGATATATTTCAGCTGCTGCCATCTAAGATTCAAGTGGGAGTTTTCTCTGCTACAATGCCTCCTGAGGCCCTTGAGATCACTAGGAAGTTTATGAACaaacctgttaggatccttgtgaagcgtgatgagctcaccttggaggGTATTAAGCAATTTTATGTCAATGTTGAGAGGGAGGATTGGAAGCTGGACACACTCTGCGATCTTTACGAGACATTAGCTATCACTCAGAGTGTCATTTTTGTTAATACCAGAAGGAAAGTTGATTGGTTGACTGACAAGATGAGAAGCCGTGACCACACAGTCTCAGCAACCCACGGAGACATGGACCAGAATACCAGGGACATTATTATGCGTGAATTCCGTTCTGGGTCTTCCCGTGTCTTGATAACCACTGATCTTTTGGCTCGTGGTATTGATGTGCAACAAGTGTCTCTAGTTATAAACTTTGATCTCCCTACACAGCCTGAGAACTATCTCCACCGTATTGGTCGTAGTGGGAGGTTCGGAAGGAAAGGTGTTGCGATCAATTTTGTCACAAAGGATGACGAGAAAATGCTGTTTGACATCCAGAAGTTTTACAACGTGCAAGTTGAGGAGCTGCCTTCAAATGTTGCTGAGCTCCTTTGA 1242 0.4356 MAGLAPEGSQFDARQYDSKMSDLLSSDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLLPDHIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVEREDWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDEKMLFDIQKFYNVQVEELPSNVAELL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00862 413 SMART ultradead3 59 256 IPR014001 -
Gma13g00862 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Gma13g00862 413 PANTHER RNA HELICASE 23 413 - -
Gma13g00862 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Gma13g00862 413 Gene3D - 30 248 IPR027417 -
Gma13g00862 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Gma13g00862 413 Gene3D - 249 413 IPR027417 -
Gma13g00862 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Gma13g00862 413 CDD SF2_C_DEAD 253 383 - -
Gma13g00862 413 SMART helicmild6 293 374 IPR001650 -
Gma13g00862 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Gma13g00862 413 CDD DEADc_EIF4A 44 242 - -
Gma13g00862 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Gma13g00862 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Gma13g00862 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00862 Gma-Chr13 22851572 22853809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00862 1 413 Eukaryotic Initiation Factors Gene Family AT1G72730 88.164 0.0 762
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00862 K03257 - gmx:110991261 817.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00862 13 22851572 22853809 Gma13g00862 13 22851572 22853809 ECH
Gma17g00502 17 4124059 4134743 Gma13g00862 13 22851572 22853809 GST
Gma13g00862 13 22851572 22853809 Gma15g01606 15 15849122 15851605 PCT
Gma13g00862 13 22851572 22853809 Gma09g00593 09 6538416 6542381 PCT
Gma15g01606 15 15849122 15851605 Gma13g00862 13 22851572 22853809 PCT
Gma09g00593 09 6538416 6542381 Gma13g00862 13 22851572 22853809 PCT