Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00856 ATGGGAGAAGAAGAAGTAACAAGAGTGAAAGCAGAGTTGTTCCAAGACAGCGAAGGAGATCCCCACGACGACGTTTTGAGCGAAAGCAAGGACTCGGGAGTGACGACGGAAGAAGTTACGATGACGACTCACGTAGTTAAAGAAGAGATAGATGACGGCGCCGTTAACGGGTCGTCGTCGCCGAAACCTATGGAAGGGTTGCACGAGGTGGGTCCCCCACCGTTCCTGAAGAAGACGTTCGAAATGGTGGAGGACCCTCACACCGACCCCATTGTGTCGTGGAGCCAAACTCGCGACAGTTTCATCGTTTGGGACTCTCACGAATTCTCCAAATCACTTCTCCCTAAGTACTTCAAGCACAGTAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGCTTTAGGAAGGTTGATTCGGACCGTTGGGAGTTTGCGAATGAAGGATTCCAAGGAGGGAAGAAGCATTTGCTGAAGAACATAAGGAGGAGGTGTAAGTACAACAAGCTGCATCAGGGAGCATTCAATATGATGAAGCCATGTGTGGATTCTGAAGTGGAGAAGCTGAAGAAGGACCAGAACATTTTGAAGGTGGAGATTCTGAAGCTGAGGCAGCAGCAGGAGAATTCGCATGTTCAGCTCACAAATGTTCAGGAGAGAATTCGGTGTGCAGAGGTAAAACAGTATCAGATGATGTATTTCCTCACCAGAATGGCTAGAAGGCCTGCGTTTGTTGAGCAGTTAGTCCATAAGATTAGGCGAAAAAGAGAGATTGATGGTAATGAAATGGTTAAGAGGCCTAGATTGATGGGAACCCCGTGCCATGTACCCTTCCCCAAGACCATGGAAACAACACCTGATTTTGATCATAGACACCAACAAGGTCATAAACAATTTGCTACATTGCAATCTGAACTCAATGGACTTCTGTCTGAAACTGTGAACACTGGTAGGATGGAGCACCCAACTCCATCTCCTTTGGAAGATGAATTATGCAGCTCTTTGCAAGGGTTAAGGGCTCATGGTATTTCTAGAGCAAGTGCGCAAGATGCATCTTCTTCTGCCTATCATGTTATGTCAGAAAAACTAATGAGAGAAAATTCTATAGTTGATGAAGAACTAGATGTGAATGACTCAAATATCTATCTCGAATTAGAGGATTTGATTACTAAGCCAACAGATTGTGCCTTGCAATTGGTTGCATGTGTGTGTTTGTGTAGATGCTCTGCTGCAACACAAGATGAAGAGCTTAATATTATAAGGCTCTTCAATTACCACTTACCAGCTTTGAAAGTGTAG 1299 0.4511 MGEEEVTRVKAELFQDSEGDPHDDVLSESKDSGVTTEEVTMTTHVVKEEIDDGAVNGSSSPKPMEGLHEVGPPPFLKKTFEMVEDPHTDPIVSWSQTRDSFIVWDSHEFSKSLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKHLLKNIRRRCKYNKLHQGAFNMMKPCVDSEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERIRCAEVKQYQMMYFLTRMARRPAFVEQLVHKIRRKREIDGNEMVKRPRLMGTPCHVPFPKTMETTPDFDHRHQQGHKQFATLQSELNGLLSETVNTGRMEHPTPSPLEDELCSSLQGLRAHGISRASAQDASSSAYHVMSEKLMRENSIVDEELDVNDSNIYLELEDLITKPTDCALQLVACVCLCRCSAATQDEELNIIRLFNYHLPALKV 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00856 432 PRINTS Heat shock factor (HSF) domain signature 75 98 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g00856 432 PRINTS Heat shock factor (HSF) domain signature 126 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g00856 432 PRINTS Heat shock factor (HSF) domain signature 113 125 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g00856 432 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 49 391 IPR027725 -
Gma13g00856 432 MobiDBLite consensus disorder prediction 1 41 - -
Gma13g00856 432 ProSitePatterns HSF-type DNA-binding domain signature. 114 138 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g00856 432 Coils Coil 186 206 - -
Gma13g00856 432 MobiDBLite consensus disorder prediction 1 31 - -
Gma13g00856 432 Gene3D - 68 165 IPR036388 -
Gma13g00856 432 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-9 49 391 - -
Gma13g00856 432 SMART hsfneu3 71 164 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g00856 432 Pfam HSF-type DNA-binding 75 164 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gma13g00856 432 SUPERFAMILY "Winged helix" DNA-binding domain 71 164 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00856 Gma-Chr13 22814017 22816053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00856 61 274 HSF AT2G26150 53.363 5.14e-81 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gma13g00856 HSF_DNA-bind 6.2e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00856 K09419 - gmx:100818430 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00856 13 22814017 22816053 Gma13g00856 13 22814017 22816053 ECH
Gma17g00507 17 4173262 4175597 Gma13g00856 13 22814017 22816053 GST