Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00853 ATGATTTCCATCAGTTTGTTCTTCTTTGATGGTTACTGCGATGTAACGAACAACCAACCAAGCTCTTATTTAGGGAGTGTAGCTGAAAGGCTTTTTCACCAATATCGGGCTTTAACATTTGATGTCAATCACGAATGTGTACCTGGAGTCGCTTTCAGGAATCAGCTTCCCTACATTGAGCTGCAACTATTGGATCTTCTAAGACTGACTTCGACAGAAATACAAACACAATTCTTTCAAATTGCTGTTTTCATGGGGTGCAAAAACGGAGAAATTGAGCTTGGGTTCTCCAACATTTCTCAAGTAATTAAGAAAACTATACTACCTTCATCATCATTTTGCTTCATGTCATTATCCACGGGTAGCCCTGATCAATGTTCATCATCACTATTACTCAGTAGTATTCCGGGTACTTCCCAGTCCCATTTTCCTCAAACCCTTCCCACACAAACACACCAACAACAAAGCATCCAAGAAATAGATTTAGCTCCTGTCATTCCAAGTTATTTTCCCACACCAGATGGTGAACATGAAGCAATAGTAAGAGCACTTATGAGTGTTATGTCTCCACTTTCTTCTTCTTCTTCAACTTCTCAGCAGCATCAACCCCGCCAAATTTTGCCTAATTATACTTCAATAGTACATCCAGGAGCCACCGCTTTCAATACATATAGATCAGATACAATGAACCCTAATATAACACCCTACATGGGATCCAATTTTCGCAGGCAAAGCCCACAGAATAGATCATTTGCATTCTTTACAAACTTAAATTTGATGAGAATGAGAGAACTCGTTAGTCAACCTGCATCCCGTCCCATTAGTACCCAACACCAGCAGCATCATATGATAACAGAGCGAAGAAGGCGCGAAAAACTCAATGAGAGTTTTCAGGCACTTAGAGCTCTTCTTCCTCCAGGAACTAAGAAAGCCAAAGGGACGATCCTTACAACAGCAAAGGATACAATGAGATCATTGATGGATGAAATTGAAAAGATTAACTTGAGAAATCAGCAGCTGATGGCAGTTTTATCAGCAAAAGAAACTACAGTGTCAGCTACTAGTACTGAAGAAAACAAAGCTAAACCTAGCAGTAGCTCCTCAAATGAAAGATTGAATGTTCTTGTTTCGGCCGTGTTGGAATCGAGTTCATTATCAGAAGAGCGAATGGTGGACGTGCAAGTGACACTGAGAGGAGAAAGTTCTCGAGTTGATGTATTGATTCGGCTATTGGAATTCTTAGAAAGGGTTCAGAACGTAAACTTGGTTTCCATGTACGCAAACAACCATATTATAGGAGGGACAACCATTAACCAATTAACCTTCAGACTGAGGATTATTGAGGGCAATGAATGGGACGAGCATGCCTTGGAGGAAGCAGTTAGAAGAGTGGTTGCTGACACAATACAGTGGAAACCACTGGACCAATAA 1431 0.4067 MISISLFFFDGYCDVTNNQPSSYLGSVAERLFHQYRALTFDVNHECVPGVAFRNQLPYIELQLLDLLRLTSTEIQTQFFQIAVFMGCKNGEIELGFSNISQVIKKTILPSSSFCFMSLSTGSPDQCSSSLLLSSIPGTSQSHFPQTLPTQTHQQQSIQEIDLAPVIPSYFPTPDGEHEAIVRALMSVMSPLSSSSSTSQQHQPRQILPNYTSIVHPGATAFNTYRSDTMNPNITPYMGSNFRRQSPQNRSFAFFTNLNLMRMRELVSQPASRPISTQHQQHHMITERRRREKLNESFQALRALLPPGTKKAKGTILTTAKDTMRSLMDEIEKINLRNQQLMAVLSAKETTVSATSTEENKAKPSSSSSNERLNVLVSAVLESSSLSEERMVDVQVTLRGESSRVDVLIRLLEFLERVQNVNLVSMYANNHIIGGTTINQLTFRLRIIEGNEWDEHALEEAVRRVVADTIQWKPLDQ 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00853 476 CDD bHLH_AtbHLH_like 282 332 IPR045239 -
Gma13g00853 476 Coils Coil 316 343 - -
Gma13g00853 476 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 6 468 IPR044658 -
Gma13g00853 476 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 277 346 IPR036638 GO:0046983
Gma13g00853 476 Pfam Helix-loop-helix DNA-binding domain 280 326 IPR011598 GO:0046983
Gma13g00853 476 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 277 326 IPR011598 GO:0046983
Gma13g00853 476 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 6 468 - -
Gma13g00853 476 SMART finulus 283 332 IPR011598 GO:0046983
Gma13g00853 476 Gene3D - 275 351 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00853 Gma-Chr13 22781926 22788734 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00853 27 467 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.200 1.22e-58 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g00853 HLH 5.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00853 - - gmx:102667064 862.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00853 13 22781926 22788734 Gma13g00853 13 22781926 22788734 ECH
Gma17g00510 17 4194557 4197880 Gma13g00853 13 22781926 22788734 GST
Gma13g00853 13 22781926 22788734 Gma15g01595 15 15661815 15667235 PCT
Gma13g00853 13 22781926 22788734 Gma09g00582 09 6352660 6357432 PCT
Gma15g01595 15 15661815 15667235 Gma13g00853 13 22781926 22788734 PCT
Gma09g00582 09 6352660 6357432 Gma13g00853 13 22781926 22788734 PCT