Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00852 ATGCCACGTACCTCGTACACCGTGGTCCCAAATCCTATATATAGGAGTCGTAGGTTACGTTACGCAATTACCAATTTTTTCTTCTTAGATGGTTACTACGATGTAACGAACAACCAACCAAGCTCTTATTTAGGGAGTGTAGCTGAAAGGTTTTTTCTCCAATATCGGGCTTTAACGTTTGATGTCAATCATGACTGTTTTCCTAGAGTCGCTTTTAGGAACCACCCTCCCTACATGGAGCTGCAGCTAGCAAATGGATCTCATGAGATTGACATCCACAGAAATACAGACACAATCCTTTCAGAGAGAAGGCGAGGAAAACTCAATGAAAATTTTCAGGCACTTCGAGCACTTCTTCCTCCGGGAACTAAGAAAAACAAAGCGGGGATTCTTACAAGTTGA 402 0.4229 MPRTSYTVVPNPIYRSRRLRYAITNFFFLDGYYDVTNNQPSSYLGSVAERFFLQYRALTFDVNHDCFPRVAFRNHPPYMELQLANGSHEIDIHRNTDTILSERRRGKLNENFQALRALLPPGTKKNKAGILTS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00852 133 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 92 133 IPR011598 GO:0046983
Gma13g00852 133 Pfam Helix-loop-helix DNA-binding domain 103 132 IPR011598 GO:0046983
Gma13g00852 133 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 99 132 IPR044658 -
Gma13g00852 133 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 25 83 IPR044658 -
Gma13g00852 133 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 98 132 IPR036638 GO:0046983
Gma13g00852 133 CDD bHLH_AtbHLH_like 99 131 IPR045239 -
Gma13g00852 133 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 99 132 - -
Gma13g00852 133 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED 25 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00852 Gma-Chr13 22776080 22779048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00852 99 132 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 71.429 1.57e-09 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g00852 HLH 9.8e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00852 - - gmx:102667064 104.375