Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00842 ATGGCCCCCAGAATCCTACTATGCGGCGACGTTTTAGGCCGCCTGAATCAGCTTTTCAAGCGCGTCTCATCGGTGAACAAATCTGCAGGTCCATTCGACGCCCTCTTGTGCGTGGGTCAGTTCTTCCCGGACTCACCGGAGCAGCTCGAGGACTTCACGAAATACATCGAAGGTGGGTCCCACTTTCCTCTCCCGACGTACTTCGTCGGCGACTACGGCGTCGCCGCCCCCAAACTTCTCCTGCAAGCTTCCAAGGACTCCGCCAACCAAGGCTTCAAGATGGATGGCTTCAAGGTTTGCCACAACTTGTACTGGCTGAAAGGCAGTGGCAAATTCTCCCTCTTCGGGTTATCCGTGGCCTATTTATCTGGTAGGAAGTCTTCCAGTGCTCAACAGTTTGGAACTTACACTGAAGACGATGTTGATGCATTGCGAGCAATTGCCGAGGAACCTGGAATTGTTGATTTGTTCTTGACATATCCTTCAATTCATGTGCATTACTCACCTGATTCGGACATTCCTGCCGGACTCTCTGATGCTGCAGGCGGTGATTCAACCGTATCGGAGTTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGCGAACCATATTCCAATGTTGATGCTGTGCATGTCACTCGTTTCATAGGGCTTGCGTCTGTTGGAAATAAAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACACCTGCATCCACCATGTCTTCAACTGAGATTGCCATGAAAACCACAAATACCACCTTATCACCATACACATATGAGGAGAAAAGAACTTCTCCAATGGATTCAACAAAAAGATCCAGTGATTCTATCTCTGATCCTCAATATTGGAGATATGATGTTTCTCAAAAGCGACAAAAACATGAAGCTGGACACGGTGATAAATTGTGTTTCAAATTTGTTTCTTCTGGTTCTTGTCCACGAGGAGAGAAGTGCAATTTTCGACATGATACAGATGCAAGGGAGCAGTGTATGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAGGGTGGTAGGCTTCCTTCTAGGAGGCCTGGATCTGGCAGGTCAAAGGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGTCACATTTAATCATAAGCATTGGGGAAAATTACTACTTGGCACTGGCTAAAGGTCCACTTGTTGAAGACCATGTACTGATTATACCAGTCGAGCATATGCCTAGTACCTTATCCATGTCTTCTGAATCTGAAATAGAGCTCTCTAGGTTTCAGAACAGTCTCAAGAGTTACTGCAAGAGCCAAGAGAAGGAAGTCATCTTTTTTGAGTGGGTCTCCGTACGTGGCACTCATGCCAATATTCAGGCCATTCCCATTCCATCTTCCAAAGCAATTATGGCCGAGAAAATTTTCAATTTAGCTGCACAGAAGTTGGGATTTGAATTTGTGACTAAGAAATTTGATAGCATTTCTGAAGGAAGGAAGTTTTTGAAGGCGCAAATTGATGGGGATTCAAGCTTGTTCTATGCTCAAATCCCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAAAGAGAAATTTCCTGCCCAATTTGGTCGTGAGGTTCTGGCTGGTGCTGAATGCCAAACTGAAAGATTTTACAGCCCTGCTGGATTTCATTTGGTAACCTTTTTTTGTCAGCAGCTTCTGTGGCAAAGAATCACCAAGCCGAGGTTGCCATTTTATAACTTAGGCTATGAGCATCAGTCAGCAAGCAGCTGTTGCATTCAAGTTTTGAAACGATTTTCACCTGCTTTTTGTACGTAA 1875 0.4485 MAPRILLCGDVLGRLNQLFKRVSSVNKSAGPFDALLCVGQFFPDSPEQLEDFTKYIEGGSHFPLPTYFVGDYGVAAPKLLLQASKDSANQGFKMDGFKVCHNLYWLKGSGKFSLFGLSVAYLSGRKSSSAQQFGTYTEDDVDALRAIAEEPGIVDLFLTYPSIHVHYSPDSDIPAGLSDAAGGDSTVSELVQEIKPRYHIAGTKGIYYAREPYSNVDAVHVTRFIGLASVGNKDKQKFIHAISPTPASTMSSTEIAMKTTNTTLSPYTYEEKRTSPMDSTKRSSDSISDPQYWRYDVSQKRQKHEAGHGDKLCFKFVSSGSCPRGEKCNFRHDTDAREQCMRGVCFDFLNKGKCERGPDCNFKHSLQDEGGRLPSRRPGSGRSKECWFCLSSPNVESHLIISIGENYYLALAKGPLVEDHVLIIPVEHMPSTLSMSSESEIELSRFQNSLKSYCKSQEKEVIFFEWVSVRGTHANIQAIPIPSSKAIMAEKIFNLAAQKLGFEFVTKKFDSISEGRKFLKAQIDGDSSLFYAQIPGGTILLHHVEEKEKFPAQFGREVLAGAECQTERFYSPAGFHLVTFFCQQLLWQRITKPRLPFYNLGYEHQSASSCCIQVLKRFSPAFCT 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00842 624 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 1 561 IPR040194 -
Gma13g00842 624 CDD MPP_CWF19_N 6 230 - -
Gma13g00842 624 SUPERFAMILY CCCH zinc finger 310 336 IPR036855 GO:0046872
Gma13g00842 624 Pfam Protein similar to CwfJ C-terminus 1 382 493 IPR006768 -
Gma13g00842 624 Gene3D - 296 368 - -
Gma13g00842 624 MobiDBLite consensus disorder prediction 268 287 - -
Gma13g00842 624 Gene3D - 379 499 IPR036265 -
Gma13g00842 624 SMART c3hfinal6 341 366 IPR000571 GO:0046872
Gma13g00842 624 SMART c3hfinal6 309 334 IPR000571 GO:0046872
Gma13g00842 624 PANTHER CWF19-LIKE PROTEIN 1 1 561 - -
Gma13g00842 624 ProSiteProfiles Zinc finger C3H1-type profile. 344 367 IPR000571 GO:0046872
Gma13g00842 624 SUPERFAMILY HIT-like 384 456 IPR036265 -
Gma13g00842 624 ProSiteProfiles Zinc finger C3H1-type profile. 312 335 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00842 Gma-Chr13 22700151 22704430 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gma13g00842 CwfJ_C_1 5.4e-38 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00842 K24939 - gmx:100782106 1096.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00842 13 22700151 22704430 Gma13g00842 13 22700151 22704430 ECH
Gma17g00516 17 4250038 4254606 Gma13g00842 13 22700151 22704430 GST