Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00841 ATGGGGGTGGTTTTGGCCTTGATGCTGCAGCTCTGCATCATTGCCTTTGCTGTGACAGCTCAAGAGTTCAAAGGGTCCATCATATCTCCATCTCCAGCATTTCTTCCAGTCGTTCCTCCTGGTGAAGAAACACTTGGTCCTATTTATCATGGAGAGGGAAGCAAAGCACCAAACCTGCCATCAGATGGAGATGGGTTTGTTATATCCCCATCTCCGGCTAACTTACATGTGTATCATTCCCCTAGCTCTCCAGCAGTACCAAATGGACCATTCTATAAGCCTCCAAAGACATTTCCACCTTCTACAACAGCTCCATCCCCTCAGAAGATTAAAGACATTGAACCATCCAAATCTCCAAGTCCGAGCACCATAGCATTATCACCACCATATGCGGTTGTTCCCTTGCCATCAGCAGTTCAAGGGAACAAGCCACCACCTGTTAAAACAAGTCCACCTCAAAGGGAAGCGCCTACTGTTAGGCCTCCTTTCTCTACACCAACTGCTCCAGCTCCAGTTGCAATATCTTCTGACAGATCACCAAAAATTTCACCAGTCAGCCAACCAATTGAACATGGACATTTGACACCTGATGTGGATAATAGGAATGCAAATAACAGTCACCTTGCAGAGTCATTTTCACCAGCACCAGGTGCAGTACCTTCTGCTAATTTGCCCAAAAATTCATCAGCCAGCCAACCAACTGAAAATGGAACTTTTCCTCCCAAAGAGGGTACAAATAATGGTCATGGCCTGGAACCAATTTCACCAGCCCCTGTAGCAGTTAATTTGCCAAAAGAGTCACCAGTCAGCCAGCCTCCTGAACATGCAAGTTTGCCGCCAATTGTCCATCAAAGGAATGCAAATATGGGTCACAACTTGAAGCCTGTTTCACCAGCCTCAGTTGCTATACCTCCCACAACTTACAAAATAACATCAATGGACAGTGAACCAACGACACAGCATGGAAGCATTCCACCTAATGTTCATAAAAGAAATTCAAATAAAGGTCACACTTCTGAGACAGTTTCACCAGAACCTGTTGCATCCCCACCATGGAAAGTGGAAAATAGCCCACCAGAGACCCACCCAATTGTCCCAACAATAACTCCATCCACATTAACTGCACCAGTTACATCACCTCCAAGTGCATTTCCATTAAAACCACCATTGGTCCATCCGATTGTTCCAGTAGCATCTCCATCAAAATTACCAGCACCTGTTTCCTCTCCCACTCCTTTGAGAAGCTTCAATTGGAAGAAGGGTGGAGCACCAGTTGTTGCACCTTTGTCCAGAAATCCAAAGCCACTTCCAGCTGTAATACACTCCCCTGCTCAAGCTCCTGTAGCACAAAAAGCAAGGCAATTACATCATGCCCCTGAGCCATTGATTTCATCTCCTAAATCTTCTTCCAATAAAGAATATCATTATCCTCCATTGTCACCTACATCCTCATTTTATAAACATCCTCATACAAGGGAGATAATTGGCAGCCCTTCTCCTGCATCATCATCTATGGTTTCTCCTCCCACTTCAAAACACCAAGAAGCAGCAATTCCTCCCTTATTGCCACCAAGAAGTGGACAAAGACATCATGTTTCACCACCAATCAACTCAAGTTCTTCAGTTTCCCCATTCTCTTCCCCTATTCATTCAAATACGGGTCAAGTTTCACCTGCTCCTTCTCCATCAATCAAATTTGCATCTCACCCAACTGGAAGCACCATTTTTCCTCCTAAAGTAGCTCCATCTGAGTCTTCTTCAAAGAGACCTAAGATGCCACTCTTGCCTCAAGTTCAAGTGCTGCCACCGCCGCCTCCTAATGAAGATTGTATATCAACTGTCTGCACAGAACCTTATACAAATTCTCCGCCTGGAGAACCTTGCAGATGTGTCTGGCCGATGCGTGTTGGTCTTCGCCTTAGTGTTTCTCTTTATACCTTCTTCCCTTTGGTTTCAGAACTAGCTTCTGAAATTGCCACTGGGGTTTTCATGAAACAAAGTCAAGTTCGCATTATGGGAGCAAATGCAGCAGACCAACAACCTGAGAAAACTGTTGTCCTTATTGATTTGGTGCCACTTGGGGAAGAGTTTGATAATACTACAGCCTTTTTTACTTCTGACAGATTCTGGCACAAAATGGTTATTATAAAAGCTTTCTACTTTGGAGACTATGACGTGTTATATGTGAGTTATCCAGGTTTACCTCCTTCTCCTCCTTTACCTCCTTCAAGCCTTAACATGTTCAATGGAGGTCCATATTCCACTGATGGCAATAATGGAAGGACGATAAAGCCCATTGGGGTCGACATACTGAAGAGACAGCAAAAAGTTGGACTTAGCAGAGGCATAATTTCCACTATTGCTGTTTCTGTTTCTTTAGCAGTTGTTTTATGTGCTGCTGCTGCCTGGGTCATGTTCAAGTTCAGAGATCATGTTAGTCAGTCAGCATCAACCCCACGGCAGCTTTCACCACCTTCTCTTACCAAAGAACCAGGTACTGCAGGATCACTTAGAGGTGCGGGTGCAGGAGTTGGTTCTGTTTCCACATCATTTCGATCTAGCATTGCTGCTTATACAGGATCTGCTAAGACTTTCAGTACGAATGACATCAAGAAAGCTACTGATGATTTCCATGCTTCAAGAATACTTGGAGAGGGCGGTTTTGGCCTTGTTTACAGTGGTATCCTTGAAGATGGGACCAAAGTGGCAGTCAAGGTTCTAAAGAGGGAGGACCATCATGGTGATCGTGAATTCTTAGCTGAAGTTGAGATGCTTAGTCGTCTTCACCATAGAAATTTGGTCAAGTTAATTGGTATATGTATTGAAAACAGCTTCCGCAGCCTTGTTTATGAACTTGTTCCAAATGGAAGCGTGGAATCCTATTTACATGGGGTTGACAGGGGAAACAGCCCACTTGATTGGGGTGCCCGGATGAAGATAgcacttggtgcagctcgtggcctagcttacctgcatgaagattcaagtccccgtgttatacatagggacttcaagtctagcaacatattgttggaagatgattttacaccaaaagtatctgattttggactggccCGAACAGCAACGGATGAGGAAAACAAGCACATATCAACACGTGTCATGGGAACTTTTGGttatgtggcgccggagtatgcaatgactgggcatcttcttgttaagagtgatgtttacagctatggtgttgttcttcttgagcttttgactggaagaaAACCTGTAGACATGTCACAAGCTCCTGGTCAAGAGAATCTTGTCGCTTGGGCTCGTCCACTTCTCACAAGTAAAGAAGGATGTGAAGCAATGATAGACCAATCTCTAGGCACTGATGTGCCCTTTGACAGTGTAGCTAAAGTTGCAGCCATTGCTTCAATGTGTGTGCAACCAGAGGTATCAAACCGTCCTTTCATGAGTGAGGTTGTGCAGGCTTTAAAACTTGTATGTAGTGAATGTGATGAAGCAAAAGAAGAATCAGGTTCAAGCAGTTTTAGCCTGGAGGATTTATCTGTTGATTTAGCTCTAGGAATAAGCACTGTTTCTGGTCAGCTATCAGATAATTTCCAAAGCCAATTATCAGGTACTAACTTTGATTCTGGAGTTGATATTGAAAGAGGCTTGGCAGCATCAGAAATTTTCAGTTCATCAGCAAGATTTGGCAGGGCGGAGTCTGGATCATTTAGAAGAAACTCTTATTCAGGTCCGCTGAGAACCGGAAGAAGCCGGCAGTTGTGGCAGATAATTAGGAGTCTTTCTAGTGGCAGTGCTCCAAAACCGATAACGAGTCCCGTCCCCGATTCGTGGTACCCCACGCTCTCCGTCTTCACCCTCGCCATCGGCCTCGTCTTAACCGCCTCTTTCTTCATTTATGAAGCAACATCTTCTAGGAAAAGTCGTTCACTTGTTCAGGAGCTGACAACTGGTGCAGTGGCTTCAGTCTTCTTGGGTTTTGGGTCCTTGTTCCTCCTACTTGCTTCTGGTGTTTATGTCTAA 4008 0.4204 MGVVLALMLQLCIIAFAVTAQEFKGSIISPSPAFLPVVPPGEETLGPIYHGEGSKAPNLPSDGDGFVISPSPANLHVYHSPSSPAVPNGPFYKPPKTFPPSTTAPSPQKIKDIEPSKSPSPSTIALSPPYAVVPLPSAVQGNKPPPVKTSPPQREAPTVRPPFSTPTAPAPVAISSDRSPKISPVSQPIEHGHLTPDVDNRNANNSHLAESFSPAPGAVPSANLPKNSSASQPTENGTFPPKEGTNNGHGLEPISPAPVAVNLPKESPVSQPPEHASLPPIVHQRNANMGHNLKPVSPASVAIPPTTYKITSMDSEPTTQHGSIPPNVHKRNSNKGHTSETVSPEPVASPPWKVENSPPETHPIVPTITPSTLTAPVTSPPSAFPLKPPLVHPIVPVASPSKLPAPVSSPTPLRSFNWKKGGAPVVAPLSRNPKPLPAVIHSPAQAPVAQKARQLHHAPEPLISSPKSSSNKEYHYPPLSPTSSFYKHPHTREIIGSPSPASSSMVSPPTSKHQEAAIPPLLPPRSGQRHHVSPPINSSSSVSPFSSPIHSNTGQVSPAPSPSIKFASHPTGSTIFPPKVAPSESSSKRPKMPLLPQVQVLPPPPPNEDCISTVCTEPYTNSPPGEPCRCVWPMRVGLRLSVSLYTFFPLVSELASEIATGVFMKQSQVRIMGANAADQQPEKTVVLIDLVPLGEEFDNTTAFFTSDRFWHKMVIIKAFYFGDYDVLYVSYPGLPPSPPLPPSSLNMFNGGPYSTDGNNGRTIKPIGVDILKRQQKVGLSRGIISTIAVSVSLAVVLCAAAAWVMFKFRDHVSQSASTPRQLSPPSLTKEPGTAGSLRGAGAGVGSVSTSFRSSIAAYTGSAKTFSTNDIKKATDDFHASRILGEGGFGLVYSGILEDGTKVAVKVLKREDHHGDREFLAEVEMLSRLHHRNLVKLIGICIENSFRSLVYELVPNGSVESYLHGVDRGNSPLDWGARMKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEDDFTPKVSDFGLARTATDEENKHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQAPGQENLVAWARPLLTSKEGCEAMIDQSLGTDVPFDSVAKVAAIASMCVQPEVSNRPFMSEVVQALKLVCSECDEAKEESGSSSFSLEDLSVDLALGISTVSGQLSDNFQSQLSGTNFDSGVDIERGLAASEIFSSSARFGRAESGSFRRNSYSGPLRTGRSRQLWQIIRSLSSGSAPKPITSPVPDSWYPTLSVFTLAIGLVLTASFFIYEATSSRKSRSLVQELTTGAVASVFLGFGSLFLLLASGVYV 1335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00841 1335 MobiDBLite consensus disorder prediction 222 243 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 86 279 - -
Gma13g00841 1335 ProSiteProfiles Protein kinase domain profile. 877 1153 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gma13g00841 1335 Pfam Oligosaccharyltransferase subunit 5 1263 1335 IPR007915 GO:0006487|GO:0034998
Gma13g00841 1335 Gene3D Phosphorylase Kinase; domain 1 848 952 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 87 102 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 531 570 - -
Gma13g00841 1335 SUPERFAMILY Protein kinase-like (PK-like) 857 1150 IPR011009 -
Gma13g00841 1335 ProSitePatterns Protein kinases ATP-binding region signature. 883 905 IPR017441 GO:0005524
Gma13g00841 1335 MobiDBLite consensus disorder prediction 463 478 - -
Gma13g00841 1335 PANTHER OS01G0750732 PROTEIN 423 1262 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 816 841 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 496 511 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 816 830 - -
Gma13g00841 1335 Gene3D Transferase(Phosphotransferase) domain 1 953 1173 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 139 168 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 103 125 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 309 345 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 309 380 - -
Gma13g00841 1335 MobiDBLite consensus disorder prediction 403 591 - -
Gma13g00841 1335 ProSitePatterns Serine/Threonine protein kinases active-site signature. 999 1011 IPR008271 GO:0004672|GO:0006468
Gma13g00841 1335 Pfam Protein tyrosine and serine/threonine kinase 879 1150 IPR001245 GO:0004672|GO:0006468
Gma13g00841 1335 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 423 1262 - -
Gma13g00841 1335 CDD STKc_IRAK 883 1151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00841 Gma-Chr13 22685565 22696941 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00841 331 1260 Receptor kinase-like Gene Family AT5G56890 55.042 0.0 873
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gma13g00841 PK_Tyr_Ser-Thr 5.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00841 - - gmx:100816296 2423.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00841 13 22685565 22696941 Gma13g00841 13 22685565 22696941 ECH
Gma17g00518 17 4259059 4261315 Gma13g00841 13 22685565 22696941 GST