Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00838 ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTTATGCCTCTGGATCTTAATGAAGATCAAAACCACGAGTTCTTCAGTCCAATTCATCACCCTTCCTCTTCGTTTTCTTCTCTATCTTCATCATATCCTATTCTCTTCAACCCGCCAAATCAAGATCAAGAAGCTCGATCATACGACTGGGAAACAACAAAGCACTTACCAAGTCATGAAGAAGAGGCTGAGAAGATTATCCCTACTAGTGGATCATGGGGTCACTCGGTGGAAGAAAGTGAGCATAAGGTGACAGTTTGGAGAAAAGAAGAGAGGAATGAAAATCTTGCTGAAGATGGTTCGGTGAAGTGGATGCCTTCGAAGATGAGAATTATGCGGAAGATGTTGGTGTCCAATCAAACTGATGCATACACTTCAGACAACAACACTACGCACAAGTTTGATGATCATAAACAACAACTGTCGTCACCGCTTGGAATTGATGATAACAGCAGCAACAACTATTCAGACAAAAGTAACAACAGTATTGTTAGGGTTTGTTCTGATTGCCACACCACCAAGACTCCTCTATGGAGGAGTGGACCAAGAGGCCCCAAGTCGCTTTGCAATGCCTGCGGAATTCGACAAAGGAAGGCAAGACGAGCCATGGCAGCTGCTGCGGCGGCAGCATTGGGAGATGGAGCAGTTATTGTGGAAGCTGAGAAATCTGTGAAGGGAAAGAAGTTGCAGAAGAAGAAAGAGAAGAAGACAAGAATTGAGGGTGCAGCTCAGATGAAAATGAAGCGGAAGCTTGGAGTTGGAGCAAAGGCATCACAAAGTAGAAACAAGTTTGGTTTTGAGGATTTGACATTGCGCTTGAGAAAGAACTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTCCTCATGGCTTTATCTTATGGCCTTGTTCATTGA 945 0.4455 MIPAYRHSVSSVMPLDLNEDQNHEFFSPIHHPSSSFSSLSSSYPILFNPPNQDQEARSYDWETTKHLPSHEEEAEKIIPTSGSWGHSVEESEHKVTVWRKEERNENLAEDGSVKWMPSKMRIMRKMLVSNQTDAYTSDNNTTHKFDDHKQQLSSPLGIDDNSSNNYSDKSNNSIVRVCSDCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAAAAALGDGAVIVEAEKSVKGKKLQKKKEKKTRIEGAAQMKMKRKLGVGAKASQSRNKFGFEDLTLRLRKNLAMHQVFPQDEKEAAILLMALSYGLVH 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00838 314 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 314 - -
Gma13g00838 314 ProSiteProfiles GATA-type zinc finger domain profile. 172 208 IPR000679 GO:0006355|GO:0043565
Gma13g00838 314 CDD ZnF_GATA 177 209 IPR000679 GO:0006355|GO:0043565
Gma13g00838 314 Gene3D - 168 261 IPR013088 GO:0006355|GO:0008270
Gma13g00838 314 SMART GATA_3 172 223 IPR000679 GO:0006355|GO:0043565
Gma13g00838 314 MobiDBLite consensus disorder prediction 154 168 - -
Gma13g00838 314 MobiDBLite consensus disorder prediction 134 168 - -
Gma13g00838 314 PANTHER GATA TRANSCRIPTION FACTOR 21-LIKE 1 314 - -
Gma13g00838 314 ProSitePatterns GATA-type zinc finger domain. 178 203 IPR000679 GO:0006355|GO:0043565
Gma13g00838 314 Pfam GATA zinc finger 178 211 IPR000679 GO:0006355|GO:0043565
Gma13g00838 314 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 171 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00838 Gma-Chr13 22644952 22647043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00838 15 314 C2C2-Gata Transcription Factor Family AT5G56860 35.354 4.81e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gma13g00838 GATA 3.4e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00838 - - gmx:100810090 547.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00838 13 22644952 22647043 Gma13g00838 13 22644952 22647043 ECH
Gma17g00521 17 4290842 4292937 Gma13g00838 13 22644952 22647043 GST
Gma13g00838 13 22644952 22647043 Gma15g01579 15 15320592 15322311 PCT
Gma13g00838 13 22644952 22647043 Gma09g00570 09 6111900 6114210 PCT
Gma15g01579 15 15320592 15322311 Gma13g00838 13 22644952 22647043 PCT
Gma09g00570 09 6111900 6114210 Gma13g00838 13 22644952 22647043 PCT