Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00828 ATGGAAGACAATAATGAAGAATGCATCACTGGGTTATGTTTGGGAATTGGAATGGGAGGGCATGTTCCAAAGAAGAATAAGCAGAAAGAGAACAAGGCTGTGGCTTGCCTAGACCTAGCGTTTGAGCTTTGTCCAAAAGGAGAAGAAGCCATTAACGTGAATCTTCATCATCATCATCATGAGAAGGTAGAAAGAATCAGCTTGGAGAGAATCCACGAGTACCCCAATGAAAAGAGCACTGATTCTGATAACAGCAACAACAACAACAGATGCAGAAAGAAACTGCGGCTTTCCAAGGAGCAATCATCCATGCTTGAGAACAGCTTCAAACAGCATAGCACTCTTAATCCGGTCCAGAAACAAGCACTAGCTGATCAATTGAATTTAAAGACTAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACCAAACTGAAGCAGACAGAAGTGGACCACGAGTTGTTGAAAAAACACTGTCAAAATCTAAGTGATGAGAACAAAAGATTGAAGAAGGAATTGCAGGAACTACGTGCACTTAAGGTTGGACCGTCGCCACTATGCATTCAACTATCCAAAACGGCGACTCTGACAACTATGTGTTCTTCCTGCGATCGAGAATTAAAACTAGTAAATTAA 642 0.4143 MEDNNEECITGLCLGIGMGGHVPKKNKQKENKAVACLDLAFELCPKGEEAINVNLHHHHHEKVERISLERIHEYPNEKSTDSDNSNNNNRCRKKLRLSKEQSSMLENSFKQHSTLNPVQKQALADQLNLKTRQVEVWFQNRRARTKLKQTEVDHELLKKHCQNLSDENKRLKKELQELRALKVGPSPLCIQLSKTATLTTMCSSCDRELKLVN 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00828 213 ProSitePatterns 'Homeobox' domain signature. 123 146 IPR017970 GO:0000981|GO:0006355
Gma13g00828 213 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 9 208 - -
Gma13g00828 213 SMART halz 148 191 IPR003106 GO:0006355|GO:0043565
Gma13g00828 213 CDD homeodomain 92 149 IPR001356 GO:0003677
Gma13g00828 213 Pfam Homeobox associated leucine zipper 148 181 IPR003106 GO:0006355|GO:0043565
Gma13g00828 213 Pfam Homeodomain 92 146 IPR001356 GO:0003677
Gma13g00828 213 SMART HOX_1 90 152 IPR001356 GO:0003677
Gma13g00828 213 Coils Coil 147 181 - -
Gma13g00828 213 PANTHER - 9 208 - -
Gma13g00828 213 Gene3D - 96 146 - -
Gma13g00828 213 ProSiteProfiles 'Homeobox' domain profile. 88 148 IPR001356 GO:0003677
Gma13g00828 213 SUPERFAMILY Homeodomain-like 79 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00828 Gma-Chr13 22575832 22577358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00828 62 207 Homeobox Transcription Factor Family AT3G60390 61.224 7.47e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma13g00828 Homeodomain 1.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00828 K09338 - gmx:100812222 417.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma17g00532 17 4365908 4367271 Gma13g00828 13 22575832 22577358 GST
Gma13g00828 13 22575832 22577358 Gma15g01572 15 15220272 15221840 PCT
Gma13g00828 13 22575832 22577358 Gma09g00566 09 6060050 6061297 PCT
Gma15g01572 15 15220272 15221840 Gma13g00828 13 22575832 22577358 PCT
Gma09g00566 09 6060050 6061297 Gma13g00828 13 22575832 22577358 PCT