Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00819 ATGAGTTTCTCCAAGGGTTCTCCTGGCAGCCAGACGCCGCAAGACATAGAGGCTGGGTCTCGGGCTAGCTTCTCTGCTGATTTTGATGATGGAGACTTTTCAGCTGATCCATTTGATGTTCCCAGAACAAAGAATGCTCCGGTTCAACGCCTCAGGCGTTGGAGGCAAGCGGCACTTGTGCTCAATGCTTCTCGTCGATTTCGTTACACCTTGGACTTAAAGAAAGAAGAAGAGACAAAGCGAGTATTAAGAATTGTTATAGTGCATACACGGGCCATTCAAGCCGCATATCGATTCAAGGAAGCTGGGCAAATGAATGGAACTATAAAACCTCCTTCAAGCTCCACTGGAGAATTTTCAGTTGGACAAGAACAACTTTCTTCAATTTCAAGGGACCGTGATGCTACTGCTCTGCAGGAAAATGGAGGGGTTGTAGGGTTATCACATTTGTTGAAAACCAATTTAGAGAAAGGGATTCAGGGTGATGATGCTGACTTGCTGAAACGGAGGAGTGCATTCGGCTCCAACAACTACCCACGAAAGAGTGGAAGAAGTTTTTTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGATTATTTTAATGGTAGCTGCAGTGGCTTCATTAGCACTGGGGATAAAATCTGAGGGTCTTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTCTTGTTACAGCTATAAGTGATTATAAGCAGTCTCTTCAGTTTCAAGACCTAAATGAGCACAAGAGAAACATACATTTGGAGGTTATTCGAGATGGTAGAAGAGTTGAGATCTCCATATATGATGTTGTTGTTGGTGATGTTATACCCCTTAACATTGGTAATCAGGTCCCTGCTGATGGAGTTTTGATCACCGGTCACTCTCTTGCAATTGATGAATCAAGTATGACTGGGGAGAGCAAGATTGTTGAAAAAAATTCTAATGATCCTTTTCTGATTTCTGGATGTAAAGTTGCAGATGGCAGTGGAACTATGCTGGTAACGGCTGTTGGTATCAATACTGAATGGGGTCTTCTAATGACCAGCATTTCCGAAGACAATGGCGAAGAAACTCCTTTGCAGGTACGCTTAAATGGTCTCACTACCTTAATTGGTATTGTTGGACTCTTTGTGGCTGTCGTTGTTCTGATGGTGCTACTGGCCAGATATTTCTCTGGGCATACTAGAAACCCAGATGGAAGTGTTCAATTTATAGCGGGCAAGACCAAAGTTGGTGATGCTATTGATGGAGTAATTAAGATATTCACTGTCGCGGTCACCATTGTGGTGATTGCAGTGCCTGAAGGGCTGCCTTTAGCAGTTACCTTAACACTTGCCTACTCAATGAAAAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAGACAATGGGGTCAGCCACAACCATTTGCAGTGATAAGACTGGAACATTGACTATGAATCAGATGACTGTGGTTGAGGCTTGGATTGGTGGTGGGAAGAAGATTGTTCCTCCTTATGAGGAATCAAAGTTCTCTCATATGCTCTGCTCTTTGCTGATTGAAGGTGTTGCACAGAACACTAATGGAAGTGTATATATCGCTGAGGGTGGTAATGATGTTGAGGTTTCTGGATCACCAACAGAAAAGGCAATTTTAGAGTGGGGAATTAAGCTTGGGATGAATTTTGACACTGCCAGATCAGACTCATCAATTATTCATGTATTCCCATTCAATTCAGACAAAAAGCGAGGAGGAGTTGCAACACGGGTGTCTGACTCTGAAATCCATATACATTGGAAAGGTGCTGCTGAGATAGTCCTAGCTTGCTGTACACGGTATTTTGATGCAAATGATCAGTTGGTGGAGATGGATGAAGCTAAGatgtcaacttttaaaaaagctattgaagatatggctgctgatagtctacgttgtgttgcgattgcatatagatcatatgaaatgaagaatgttccaactagtgaagaagaactttctcactggtcattgccagaggataatcttgttttattggctattattggcctaaaggatccttgccgacctggtgtcaaagatgcagtgaagctttgccaaaaggctggggttgagGTAAAAATGGTCACTGGTGACAACGTTAAAACTGCAAGAGCAATTGCTGTGGAATGTGGAATCCTTGGTTCAATTTCTGATGCTACAGAGCCAATCATCATTGAAGGAAAAAACTTTCGTGCCTTGACAGAAGAAGGGAGAGCAGATATTGTTGAAAAGATATTGGTTATGGGACGGTCATCTCCTAATGACAAGCTTTTGCTTGTGCAAGCATTGAGGAGGAAGGGGCATGTTGTGGCTGTAACTGGAGATGGAACAAATGATGCTCCTGCACTGCATGAGGCCGATATTGGTCTTGCAATGGGTATCCAAGGTACAGAAGTTGCTAAAGAGAGCTCTGATATCATTATTTTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAAATGGGGGCGGTCTGTATATGCAAATATTCAGAAATTTATCCAGTTTCAGCTTACAGTCAATATAGCAGCACTTGCTATAAATGTTGTTGCTGCATTTTCCACCGGTGACATCCCACTAAATACAGTACAGCTTCTCTGGGTAAATCTTATCATGGATACTCTTGGAGCATTAGCCTTGGCAACTGAACCGCCAACTGATTCTCTGATGGATCAAAGCCCTAAGGGTCAAAGAGAACCTCTTGTATCAAATATTATGTGGAGGAATCTGCTGATACAGGCAATGTACCAATTGTCTGTCTTGCTTATACTTAATTTCCGAGGTGTGAGCTTACTGGGTTTGAGGGATGAGCCCAACCGCCCTGCAATCAAAGTGAAGAACTCTCTGATATTCAATGCATTTGTTCTTTGTCAAGTCTTTAATGAATTTAATGCCCGAAAGCCAGATAAATTCAACATATTCAAGGGAGTCACAAGAAACTACCTCTTTATGGGGATAGTAGGAATAACTGTTGTGCTTCAGATTGTCATCGTTGAATATCTTGGGAAGTTCACTAAAACAGCCAAGCTTAATTGGAAGCAGTGGCTCATTTCTGTTATTATAGCATTTATCAGCTGGCCTCTTGCTGTGGTTGGAAAACTGATACGAAGTCTTGCTGATTCCCTCTCTCCCGTCCGTCTCATTTTATTGACAGGTTTTCATACAGCAGACAATGAAAATGGTGCATGGCCTGCTCAACCGTTGGAGCATATCTACCCACACAATATGATGGGGACTGGAGGCCCTTCTGGACACCTTCACGCAACACAATATCTTCTATCTGCTCATCAACCAAATGTGGGTATATCACAACTAGAGGAAAATTTCTAA 3390 0.3971 MSFSKGSPGSQTPQDIEAGSRASFSADFDDGDFSADPFDVPRTKNAPVQRLRRWRQAALVLNASRRFRYTLDLKKEEETKRVLRIVIVHTRAIQAAYRFKEAGQMNGTIKPPSSSTGEFSVGQEQLSSISRDRDATALQENGGVVGLSHLLKTNLEKGIQGDDADLLKRRSAFGSNNYPRKSGRSFLMFMWDACKDLTLIILMVAAVASLALGIKSEGLKEGWYDGGSIAFAVILVILVTAISDYKQSLQFQDLNEHKRNIHLEVIRDGRRVEISIYDVVVGDVIPLNIGNQVPADGVLITGHSLAIDESSMTGESKIVEKNSNDPFLISGCKVADGSGTMLVTAVGINTEWGLLMTSISEDNGEETPLQVRLNGLTTLIGIVGLFVAVVVLMVLLARYFSGHTRNPDGSVQFIAGKTKVGDAIDGVIKIFTVAVTIVVIAVPEGLPLAVTLTLAYSMKKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEAWIGGGKKIVPPYEESKFSHMLCSLLIEGVAQNTNGSVYIAEGGNDVEVSGSPTEKAILEWGIKLGMNFDTARSDSSIIHVFPFNSDKKRGGVATRVSDSEIHIHWKGAAEIVLACCTRYFDANDQLVEMDEAKMSTFKKAIEDMAADSLRCVAIAYRSYEMKNVPTSEEELSHWSLPEDNLVLLAIIGLKDPCRPGVKDAVKLCQKAGVEVKMVTGDNVKTARAIAVECGILGSISDATEPIIIEGKNFRALTEEGRADIVEKILVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVKWGRSVYANIQKFIQFQLTVNIAALAINVVAAFSTGDIPLNTVQLLWVNLIMDTLGALALATEPPTDSLMDQSPKGQREPLVSNIMWRNLLIQAMYQLSVLLILNFRGVSLLGLRDEPNRPAIKVKNSLIFNAFVLCQVFNEFNARKPDKFNIFKGVTRNYLFMGIVGITVVLQIVIVEYLGKFTKTAKLNWKQWLISVIIAFISWPLAVVGKLIRSLADSLSPVRLILLTGFHTADNENGAWPAQPLEHIYPHNMMGTGGPSGHLHATQYLLSAHQPNVGISQLEENF 1129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00819 1129 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 491 690 IPR023299 GO:0000166
Gma13g00819 1129 SUPERFAMILY Calcium ATPase, transduction domain A 262 357 IPR008250 -
Gma13g00819 1129 PANTHER CALCIUM-TRANSPORTING ATPASE 31 1063 - -
Gma13g00819 1129 SFLD C1.7: P-type atpase like 466 845 - -
Gma13g00819 1129 Pfam Ca2+-ATPase N terminal autoinhibitory domain 35 78 IPR024750 GO:0005516
Gma13g00819 1129 Gene3D - 481 838 IPR023214 -
Gma13g00819 1129 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 229 398 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00819 1129 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 424 553 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00819 1129 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 761 873 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00819 1129 Gene3D - 165 360 - -
Gma13g00819 1129 Pfam Cation transporter/ATPase, N-terminus 142 209 IPR004014 -
Gma13g00819 1129 CDD P-type_ATPase_Ca_PMCA-like 166 926 - -
Gma13g00819 1129 SMART Cation_ATPase_N_a_2 143 214 IPR004014 -
Gma13g00819 1129 MobiDBLite consensus disorder prediction 1 27 - -
Gma13g00819 1129 Pfam E1-E2 ATPase 262 462 - -
Gma13g00819 1129 PRINTS Sodium/potassium-transporting ATPase signature 604 622 - -
Gma13g00819 1129 PRINTS Sodium/potassium-transporting ATPase signature 227 247 - -
Gma13g00819 1129 PRINTS Sodium/potassium-transporting ATPase signature 477 498 - -
Gma13g00819 1129 Gene3D - 494 693 IPR023299 GO:0000166
Gma13g00819 1129 SUPERFAMILY Calcium ATPase, transmembrane domain M 143 1056 IPR023298 -
Gma13g00819 1129 SUPERFAMILY HAD-like 482 898 IPR036412 -
Gma13g00819 1129 Pfam Cation transporting ATPase, C-terminus 878 1055 IPR006068 -
Gma13g00819 1129 Gene3D - 47 102 - -
Gma13g00819 1129 Gene3D - 192 1053 - -
Gma13g00819 1129 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 120 1055 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Gma13g00819 1129 ProSitePatterns E1-E2 ATPases phosphorylation site. 486 492 IPR018303 -
Gma13g00819 1129 MobiDBLite consensus disorder prediction 1 19 - -
Gma13g00819 1129 PRINTS P-type cation-transporting ATPase superfamily signature 308 322 - -
Gma13g00819 1129 PRINTS P-type cation-transporting ATPase superfamily signature 708 718 - -
Gma13g00819 1129 PRINTS P-type cation-transporting ATPase superfamily signature 484 498 - -
Gma13g00819 1129 PRINTS P-type cation-transporting ATPase superfamily signature 686 697 - -
Gma13g00819 1129 PRINTS P-type cation-transporting ATPase superfamily signature 817 829 - -
Gma13g00819 1129 PRINTS P-type cation-transporting ATPase superfamily signature 793 812 - -
Gma13g00819 1129 Pfam haloacid dehalogenase-like hydrolase 481 807 - -
Gma13g00819 1129 PANTHER CATION TRANSPORTING ATPASE 31 1063 - -
Gma13g00819 1129 SFLD p-type atpase 466 845 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00819 Gma-Chr13 22488390 22508519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00819 2 1055 Primary Pumps ATPases AT5G57110 70.482 0.0 1509
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00819 K01537 - gmx:100813841 1999.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00819 13 22488390 22508519 Gma13g00819 13 22488390 22508519 ECH
Gma17g00545 17 4466032 4488053 Gma13g00819 13 22488390 22508519 GST
Gma13g00819 13 22488390 22508519 Gma15g01560 15 14996624 15020366 PCT
Gma13g00819 13 22488390 22508519 Gma09g00553 09 5909228 5925819 PCT
Gma15g01560 15 14996624 15020366 Gma13g00819 13 22488390 22508519 PCT
Gma09g00553 09 5909228 5925819 Gma13g00819 13 22488390 22508519 PCT