Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00813 ATGGAGAATATTGGTGAGGATCAGTACGGCTACTTGCCGGAGACCGACCTGTTTTTCCCAAACGAAGACCTTGGCAGCTGGGCAATAATGGATGGGGAAGCGGTCTCATGGTACTATGATTCAAGCTCCCCGGACGGCACCGGTGCTTCTTCATCGGTGGCATCTAAGAACATTGTCTCCGAGAGGAATAGAAGGAAGAAGCTCAACGATAGGCTTTTGGCACTTAGAGCAGTGGTCCCCAACATTACCAAGATGGATAAGGCTTCTATCATTAAGGATGCTATAGAGTACATCCAGCACTTGCATGAACAAGAGAAGAGAATCCAAGCTGAGATTTTGGATCTAGAATCTAGGAATAAGTTCAAAAATCCAACCTATGAATTTGACCAGGACCTCCCTATTCTGCTCAGGTCTAAGAAGAAGAAAACAGAACACCTATTTGATTCTCTCAGTTCAAGAAATTCCCCATCAATTGAAATAATTGAGCTGAGGGTAACATACATGAGAGAGAAGACGTTTGTGGTGAACTTGACATGTAGTAAAAGGACAGACACAATGGTAAAACTGTGTGAGGTGTTCGAATCTTTAAAGCTCAAAGTCATTGCGGCCAATATCACATCTTTTTCAGGCACGCTTTTGAAGAAGACAGCCTTCATCGAGGCAGATGAAAAAGAGGAAGACTTTTTGAAGATAAAAATTCAGACAGCGATTTCAGCTCTCAATGATCCTCAAAGCCCAATGAGCATCTGA 750 0.4307 MENIGEDQYGYLPETDLFFPNEDLGSWAIMDGEAVSWYYDSSSPDGTGASSSVASKNIVSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQHLHEQEKRIQAEILDLESRNKFKNPTYEFDQDLPILLRSKKKKTEHLFDSLSSRNSPSIEIIELRVTYMREKTFVVNLTCSKRTDTMVKLCEVFESLKLKVIAANITSFSGTLLKKTAFIEADEKEEDFLKIKIQTAISALNDPQSPMSI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00813 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 118 IPR036638 GO:0046983
Gma13g00813 249 SMART finulus 58 107 IPR011598 GO:0046983
Gma13g00813 249 Coils Coil 98 118 - -
Gma13g00813 249 Pfam Helix-loop-helix DNA-binding domain 59 102 IPR011598 GO:0046983
Gma13g00813 249 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 1 243 - -
Gma13g00813 249 PANTHER TRANSCRIPTION FACTOR BHLH35 1 243 - -
Gma13g00813 249 Gene3D - 50 119 IPR036638 GO:0046983
Gma13g00813 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 101 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00813 Gma-Chr13 22410511 22417937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00813 1 220 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 56.951 1.75e-70 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gma13g00813 HLH 6.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00813 - - gmx:100803326 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00813 13 22410511 22417937 Gma13g00813 13 22410511 22417937 ECH
Gma17g00552 17 4555162 4559599 Gma13g00813 13 22410511 22417937 GST
Gma13g00813 13 22410511 22417937 Gma15g01552 15 14730461 14738740 PCT
Gma13g00813 13 22410511 22417937 Gma09g00546 09 5709501 5717655 PCT
Gma15g01552 15 14730461 14738740 Gma13g00813 13 22410511 22417937 PCT
Gma09g00546 09 5709501 5717655 Gma13g00813 13 22410511 22417937 PCT