Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00809 ATGTCTTCTTCGTGTTTGAGTGGAGCCGGGGGAAGAACCTATGGATTCGATTTCGAATTCGTTAAATCTCCATCTTCATCTACTTTCACATCGCACACATCTTCTTCACCTTCCTCAACAATCTCCGAATCGAGCAATTCGCCGCTAGCAATCTCAACTAAGAAACCCAGAACACCGCGGAAGCGACCCAACCAAACCTACAACGAAGCCGCGGCGCTTCTCTCCACCGCGTACCCGAATTTGTTCTCCACGAAGAACCTCAAGACGCAGGGCAAAGGCAAATTCTCGAGGCCCACATCGGAGAATTTCGATTACGAGTCTTCGGAGCCGTTATTGCCGTTCAGAGTCTTCGACGGAACGGCGTCGTGTTTTCTTTTGGACCAAACGGGCCCGAAGCCCATCATGGAGAGGCCCAAAGTGGTGAGCGTGCAGGAGAAGGAGAATAATAATAACAAGGCGTGTGAGAGCCCCGGCGAGATAAGCTCCATCGTGAATTTCAATTCAGTTGAATTGAACGATGACGGTGAAGAGAGCCTCGACGCGGAATCGATTCTCGATGAGGAAATCGAAGAAGGGATCGATAGCATCATGGGGAGCAGTATCCAAGAGGTCTCAAACGACGCCGTTAGTAACTTGCCCTGGATTATGCCTTTTGACGGGAAATTGGAGTTCCCGAGACCCCGTGTTAGGGCTCTCCGCCACGTCGACGACGGAAACTGGTGGAATTTTCCGGCCGTCGATATTCTTTCAATATCGCCCAAAATTAACACCAAGCCTCCGCCCGTGGCCGCCGAGAAGAAGATGAAGAAGAAGAAGAAGGTGGCCACGCCGGCGGAGAAAACGGTCGTCGTGGAGTTGAAGAACGCGGAATTGCCCAAACCGAAACAGGGTTTGATGTTGAAATTGAATTACGACGACGTTCGGAACGCTTGGTCTGACCGCGGAACACCGTTCTCCGACGACAGTCCCCTAGCCGACGTGCCGGGAAATGACGTCACTGCGCGGCTGTCGCAAATTGATTTGTTGTGGGACAATGGAGGAGTGAGAGAAGCTAGCGTGCTGCGCTACAAGGAGAAGCGGCGAACGCGCCtCTTCTCGAAGAAGATCAGGTACCAGGTCAGGAAAGTCAACGCAGATCGACGGCCCAGAATGAAGGTACGAGTCAGTTCACAGTTGAGTTGA 1182 0.522 MSSSCLSGAGGRTYGFDFEFVKSPSSSTFTSHTSSSPSSTISESSNSPLAISTKKPRTPRKRPNQTYNEAAALLSTAYPNLFSTKNLKTQGKGKFSRPTSENFDYESSEPLLPFRVFDGTASCFLLDQTGPKPIMERPKVVSVQEKENNNNKACESPGEISSIVNFNSVELNDDGEESLDAESILDEEIEEGIDSIMGSSIQEVSNDAVSNLPWIMPFDGKLEFPRPRVRALRHVDDGNWWNFPAVDILSISPKINTKPPPVAAEKKMKKKKKVATPAEKTVVVELKNAELPKPKQGLMLKLNYDDVRNAWSDRGTPFSDDSPLADVPGNDVTARLSQIDLLWDNGGVREASVLRYKEKRRTRLFSKKIRYQVRKVNADRRPRMKVRVSSQLS 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00809 393 Pfam CCT motif 349 387 IPR010402 GO:0005515
Gma13g00809 393 MobiDBLite consensus disorder prediction 24 64 - -
Gma13g00809 393 MobiDBLite consensus disorder prediction 24 53 - -
Gma13g00809 393 PANTHER OS02G0148000 PROTEIN 1 388 - -
Gma13g00809 393 ProSiteProfiles CCT domain profile. 349 391 IPR010402 GO:0005515
Gma13g00809 393 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 1 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00809 Gma-Chr13 22381639 22383367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00809 282 387 C2C2-CO-like Transcription Factor Family AT1G25440 43.089 3.45e-18 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma13g00809 CCT 4.5e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00809 - - gmx:100784788 721.465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00809 13 22381639 22383367 Gma13g00809 13 22381639 22383367 ECH
Gma17g00556 17 4583880 4586666 Gma13g00809 13 22381639 22383367 GST
Gma13g00809 13 22381639 22383367 Gma15g01549 15 14656192 14658256 PCT
Gma13g00809 13 22381639 22383367 Gma09g00542 09 5659003 5661024 PCT
Gma15g01549 15 14656192 14658256 Gma13g00809 13 22381639 22383367 PCT
Gma09g00542 09 5659003 5661024 Gma13g00809 13 22381639 22383367 PCT