Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00807 ATGCGGGACAGTGAGAAGAAGTTAAACAACAAAGGATCTAAAAAATCCAGTCCTTTGAAGGTGCGTAAGAAGGGCCAAGGGAAGAAGGAAAAAGTGAAAGTGGGATCAAAATCTCACACAAAAAATGCTGGCACTGATATATCAAGGAAGAGGGTCATCTCTTCTCTCAAGGTCAAAGGGCCACGTAAGGATTCTTCAGATAAGAAATTGATTACTGGAAAAAAATTGCCTATGAAGAACAAAAAATCTTCACAGAAGTCATCCTCAAAGTTACAAGGCAAAAAAGCTTCTCTTAGCTCTAGAAAAGAGGGGGGAGATGCTGATGGGGCGGTAAAGCTTCAAAAAATGAAGAGGAAGAGAAAGAAGAAAAGGCCAAGGAATAATGTGGATCTTGATGATCCTTCACGCCTACAGAGGAGAACAAGGTATCTTTTAATCAAAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCTGGAGAAGGTTGGAAAGGTCAGAGTCGAGAAAAGATTAGGCCAGAAAAGGAGCTACAAAGAGCAAGGAAGCAGATTTTAAAATGTAGACTTGGTATTCGTGATGCCATTCGCCAGTTGGATTCTCTTGGTTCACTGAGTAGCATTGAAGATTCTGCCATTGCTCTAGATGGATCTGTTTGCCATGAACATATATTGTGTGTAAAGTGCAAGGTGCATGAAGAACTTCCAGATAATGATATTATACTATGCAATGGTAAATGCGAGCGTGCTTTTCACCAAAAATGTCTAGACCCTCCTTTGGACACCGAAAATATTTCTCCTGGAGAGCAGGGTTGGTTTTGTAAATTTTGTGAATGTAAGATGGAAATACTGGAGGCAACTAATGCTCATCTTGGAACTCACTTCTCGTTGCACAGTACTTGGCAGGATGTATTCAAAGAAGAGGCAGCTATACCTGATGGTGAGATTGCATTACTAAATCCTGAACAAGAATGGCCATCAGATGATTCCGAAGATGATGATTATGACCCAGAGAGGAAAGAAGACAGCCACAATATCAACATAGAAGGAACTAATGATAGTGCATCTGAGGATTTAAGCAGTTCTACCAGTCTGTGTTCTTCTGATGGTGAATGTTCTCCAATAGATGGTGTCAGTCATGAATATTTTTCTGTCAATAGCAGCATAGATTCTGATGAGTCTGAGGACAAAGCCTGTGGGCGTAGGCAGAGAAAAGCTGTTGACTACAAGAAACTTTATGATGAAATGTTTGGGAAAGATGCGCCTGCCTATGAACTATTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTGATTCTCTTATGACTTTGCATGAAAGTGAGAATAGGCATCCCAATAATGAGCACAACATGACAAGTAAAGATTCTTCAAGCATAAAGATCAAAAGGCATTGTTTTAGGATTCCACGTGATGCAGTTGAGAGGCTTCGCCAAGTTTTTGCTGAGAACGAACTTCCTCCAAGATCTATAAGAGAGGGTCTTTCAAAAGAGCTGGGCCTTGACACCGAGAAGGTCAGCAAATGGTTCAAAAATGCACGTTACTTAGCACTTAAAAACAGAAAGCATCAAGCAGAAGGAGTAGCAGATCAGCTTCAGAGTATCACTTCTACAAAGAACAGATTACAAAAACAGGAGAATGTCGATCCTTTGAAATCAAAGACCCCAAAAATTACTAGGACACATTCCCAGAAGGATGTTAAAAATGTCAATGGAAGAAAGAAAATGAAGTCATCTAACAAGAAAAGACAACCAGAAATTCCTCCACCTCCAGGAGAAAATGGCAAGAAGGACTTTATGGAGATCAGTGATGATGTGAGCTTGAAGAAACTGTTGAAGAAAAGAAAGAAGAGGTTGATAAATTTTACGTTTGGAGGAGACTCTCAGTTGGCAGAGTTGGAATTTGAAAGACTAAGCGAATTGAAGACTAAAGTAGATAGTATGAAGCAAAAATTAACTGCAATTCAAAATTACAGAGTTAAGGGTTCACCCTATTCGAATGAACCATCCATTGTATATGTACCCACAGCTGTGTTAAGGGAAAAGGTTGAATGA 2100 0.399 MRDSEKKLNNKGSKKSSPLKVRKKGQGKKEKVKVGSKSHTKNAGTDISRKRVISSLKVKGPRKDSSDKKLITGKKLPMKNKKSSQKSSSKLQGKKASLSSRKEGGDADGAVKLQKMKRKRKKKRPRNNVDLDDPSRLQRRTRYLLIKMKLEQNLIDAYSGEGWKGQSREKIRPEKELQRARKQILKCRLGIRDAIRQLDSLGSLSSIEDSAIALDGSVCHEHILCVKCKVHEELPDNDIILCNGKCERAFHQKCLDPPLDTENISPGEQGWFCKFCECKMEILEATNAHLGTHFSLHSTWQDVFKEEAAIPDGEIALLNPEQEWPSDDSEDDDYDPERKEDSHNINIEGTNDSASEDLSSSTSLCSSDGECSPIDGVSHEYFSVNSSIDSDESEDKACGRRQRKAVDYKKLYDEMFGKDAPAYELLSEDEDWGPGKRKRREKESDAVDSLMTLHESENRHPNNEHNMTSKDSSSIKIKRHCFRIPRDAVERLRQVFAENELPPRSIREGLSKELGLDTEKVSKWFKNARYLALKNRKHQAEGVADQLQSITSTKNRLQKQENVDPLKSKTPKITRTHSQKDVKNVNGRKKMKSSNKKRQPEIPPPPGENGKKDFMEISDDVSLKKLLKKRKKRLINFTFGGDSQLAELEFERLSELKTKVDSMKQKLTAIQNYRVKGSPYSNEPSIVYVPTAVLREKVE 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00807 699 SMART PHD_3 224 277 IPR001965 -
Gma13g00807 699 MobiDBLite consensus disorder prediction 347 369 - -
Gma13g00807 699 MobiDBLite consensus disorder prediction 318 369 - -
Gma13g00807 699 ProSiteProfiles Zinc finger PHD-type profile. 222 279 IPR019787 -
Gma13g00807 699 SUPERFAMILY Homeodomain-like 471 534 IPR009057 -
Gma13g00807 699 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 2 672 - -
Gma13g00807 699 MobiDBLite consensus disorder prediction 57 74 - -
Gma13g00807 699 MobiDBLite consensus disorder prediction 16 30 - -
Gma13g00807 699 Gene3D - 459 541 - -
Gma13g00807 699 SMART HOX_1 477 539 IPR001356 GO:0003677
Gma13g00807 699 Pfam Homeodomain 486 530 IPR001356 GO:0003677
Gma13g00807 699 MobiDBLite consensus disorder prediction 542 559 - -
Gma13g00807 699 MobiDBLite consensus disorder prediction 96 113 - -
Gma13g00807 699 Pfam PHD-finger 225 279 IPR019787 -
Gma13g00807 699 MobiDBLite consensus disorder prediction 536 614 - -
Gma13g00807 699 SUPERFAMILY FYVE/PHD zinc finger 215 282 IPR011011 -
Gma13g00807 699 CDD PHD_PRHA_like 224 276 IPR045876 -
Gma13g00807 699 Coils Coil 653 673 - -
Gma13g00807 699 PANTHER POLYCOMB PROTEIN PCL 2 672 - -
Gma13g00807 699 MobiDBLite consensus disorder prediction 453 474 - -
Gma13g00807 699 MobiDBLite consensus disorder prediction 1 134 - -
Gma13g00807 699 ProSitePatterns Zinc finger PHD-type signature. 225 276 IPR019786 -
Gma13g00807 699 MobiDBLite consensus disorder prediction 560 588 - -
Gma13g00807 699 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 273 IPR013083 -
Gma13g00807 699 CDD homeodomain 476 539 IPR001356 GO:0003677
Gma13g00807 699 ProSiteProfiles 'Homeobox' domain profile. 475 535 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00807 Gma-Chr13 22370006 22374464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00807 127 540 Homeobox Transcription Factor Family AT4G29940 55.529 8.68e-151 455
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Gma13g00807 Homeodomain 6.7e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00807 - - gmx:100815437 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00807 13 22370006 22374464 Gma13g00807 13 22370006 22374464 ECH
Gma17g00559 17 4598883 4603247 Gma13g00807 13 22370006 22374464 GST
Gma13g00807 13 22370006 22374464 Gma15g01547 15 14630280 14650538 PCT
Gma13g00807 13 22370006 22374464 Gma09g00541 09 5650464 5657183 PCT
Gma15g01547 15 14630280 14650538 Gma13g00807 13 22370006 22374464 PCT
Gma09g00541 09 5650464 5657183 Gma13g00807 13 22370006 22374464 PCT