Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00777 ATGTTTTCTTTTTCCTTAATCTCAGGCCTTGCACTTGATCCTTCTAAGTGCAGTAAATTGAGTATGGAGGAAAAAAGAGAACTTGTATATGAAGTATCTAACTGGTCGCATGGTGCATCTGAGATGCTGCAGTCATGGAGTCGTCAAGAGATTTTGCAAATATTGTGTGCAGAAATGGGGAAAGAGAGAAAGTATACTGGGCTGACAAAGTTGAAAATTATAGAAAATCTTCTAAAAATTGTTTCTGAAAAGAAATCAGGCGGGAATGAAACTGCGACAGACCCTGAACCACAATCTTCTCCTGCACCTGGTCAGAAGCCTGCCAAAAGGCAGAGAAAGTCTGAGAATCCTTCACACATCCCTGTTCCTGCGACCAGCGTTCCAGTCAATAATGGTGGTGATTCTATTAATACCACATTCTGCAAAAACTCAGCTTGCAAAGCTACCCTGAATCAATCAGATGCATTTTGCAAAAGATGTTCATGCTGCATTTGTCATCAATATGATGACAACAAAGACCCTAGCCTGTGGTTAATATGTAGTTCTGAGAATCCATTTCCTGGTGTTTCTTGTGGCTTGTCATGCCACCTTGAGTGTGCTTTAAAACATGATGGTTCAGGAATTGGCAAGGATGGTGAGCGTCCCAAGCTTGATGGAGGCTTCTACTGTGTCTCTTGTTGGAAAATAAATGATTTACTCGGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATACTAGACGCGTAGATATACTCTGTTATCGTGTCTCCTTAAGCCAAAGACTTTTACAAGGAACTGAAATGTATGAAGAACTTTATAAAATTGTTGATGAAGCAGTGAAGAAACTTGAACCTGAAGTGGGTCCACTCACTGGCTCACCGGTGAAGATTGGAAGGGGGATTGTGAACAGGCTTTCTTCGGGACCTGAGGTTCAGAAACTCTGTGGTTTTGCTCTGGAATCACTTGATTCACTATCGAAAAGGATCTTGCCTTTGTCACCCAAGCCAACAAATCAAGATGCATATTTGCTCGCTCCAAATATGTTGAGGTTTGAAGATGTCACTGCCACTACCCTCACTATTATTTTGGGTTCTGAAGAACCCTCTGGTGAAATTCTTGCTGGTTACACCTTGTGGCATCGCAAAGTTGATGATGTGGACTATCCCATGGACCCAACTTGCACCTCGCTCTTACCAAATAGAAGGTTCAGTGTCTCGGGCCTAATTCCAGGTACAGAATACAGTTTCAAAGTTGTTTCCAATGATTTGAGGGAGTCAGGTATGTGCGAAGTTCAAGTCTCAACAGAGCATGGTGAGGAAGAAGTCCCTAATTGCTCAGCAACTGAAAGAAGTCAGAGCCCGGTAACCAACTGTAGCAGCCTTTCCAATCCATCATCCGTGGAAGATGAAACTAATAACTGTAATCCATATAGTGACCTGACTGATAACCAAGCAGACCATTATCCTTCTTATCACAAGGATAGCAACAAACTTGCTTCTGGAAATTTATCCAATGATGCTATTAACTGTTCCAATCTAGGTGGTGCGGGACTTCCTCCTGATGCAGATTCTTTGTCAGACAAACAGCATGCTGGAGGAACGACTGCCTCCATACCTAGTTCTGATGTGCTAAAGCTCGAAAACAAGCATTCACCAGAGGAACAAATCACTGAGGACATGAGCACCGATGATGGGTTGATTTCCCCAGCTCTAACAGGGAGGGAATGTGTGCCGTTAGTGGGTAGCTCGGAAGGAGGCTTGCCTAATACTCCCTGCAAGTTGGAAACACTTAAGGATGGACCTGGAAAGAATAAAAGATCTAAGTCCAGTGGCAAAGATCAAGAAAATGTATCCGGGAAAAGGGAGGGTCCCCAAGATGGAAGCACATCCAAGAAGAGAAGTGGAGAAAGGCAAGAGGAGGGCCGTGTTGCAAATGGCTTTTCGGATCGTGATTTTGAGTATTATGTGAAGGTGATTAGGTGGTTAGAGTGTGAAGGTCACATAGAAAAGAACTTCAGGCAGAAATTTCTGACTTGGTACAGCTTAAGAGCCACCCCTCAAGAAGTTAGGATTGTGAAAATATACATTGATACATTTCTTGAAGATCCTGCATCTCTTGCAGAGCAACTTGTGGACACCTTCTCGGAATGTTTGTCCAGCAAGAGAACATCAGTTGTGCCAGCGGGGTTCTGCATGAAGCTTTGGCATTGA 2211 0.4337 MFSFSLISGLALDPSKCSKLSMEEKRELVYEVSNWSHGASEMLQSWSRQEILQILCAEMGKERKYTGLTKLKIIENLLKIVSEKKSGGNETATDPEPQSSPAPGQKPAKRQRKSENPSHIPVPATSVPVNNGGDSINTTFCKNSACKATLNQSDAFCKRCSCCICHQYDDNKDPSLWLICSSENPFPGVSCGLSCHLECALKHDGSGIGKDGERPKLDGGFYCVSCWKINDLLGCWRKQLMVAKDTRRVDILCYRVSLSQRLLQGTEMYEELYKIVDEAVKKLEPEVGPLTGSPVKIGRGIVNRLSSGPEVQKLCGFALESLDSLSKRILPLSPKPTNQDAYLLAPNMLRFEDVTATTLTIILGSEEPSGEILAGYTLWHRKVDDVDYPMDPTCTSLLPNRRFSVSGLIPGTEYSFKVVSNDLRESGMCEVQVSTEHGEEEVPNCSATERSQSPVTNCSSLSNPSSVEDETNNCNPYSDLTDNQADHYPSYHKDSNKLASGNLSNDAINCSNLGGAGLPPDADSLSDKQHAGGTTASIPSSDVLKLENKHSPEEQITEDMSTDDGLISPALTGRECVPLVGSSEGGLPNTPCKLETLKDGPGKNKRSKSSGKDQENVSGKREGPQDGSTSKKRSGERQEEGRVANGFSDRDFEYYVKVIRWLECEGHIEKNFRQKFLTWYSLRATPQEVRIVKIYIDTFLEDPASLAEQLVDTFSECLSSKRTSVVPAGFCMKLWH 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00777 736 MobiDBLite consensus disorder prediction 598 643 - -
Gma13g00777 736 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 736 IPR044514 GO:0010048|GO:0040029
Gma13g00777 736 MobiDBLite consensus disorder prediction 434 497 - -
Gma13g00777 736 MobiDBLite consensus disorder prediction 86 130 - -
Gma13g00777 736 MobiDBLite consensus disorder prediction 439 485 - -
Gma13g00777 736 PANTHER VIN3-LIKE PROTEIN 2-RELATED 9 736 - -
Gma13g00777 736 Gene3D Immunoglobulins 343 442 IPR013783 -
Gma13g00777 736 ProSiteProfiles Fibronectin type-III domain profile. 345 440 IPR003961 GO:0005515
Gma13g00777 736 MobiDBLite consensus disorder prediction 528 544 - -
Gma13g00777 736 CDD PHD_VIN3_plant 161 226 - -
Gma13g00777 736 SUPERFAMILY Fibronectin type III 345 420 IPR036116 GO:0005515
Gma13g00777 736 MobiDBLite consensus disorder prediction 519 643 - -
Gma13g00777 736 CDD FN3 345 419 IPR003961 GO:0005515
Gma13g00777 736 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00777 Gma-Chr13 22013923 22018056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00777 5 508 PHD Gene Family AT4G30200 52.974 3.48e-164 486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00777 - - gmx:100819331 1494.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00777 13 22013923 22018056 Gma13g00777 13 22013923 22018056 ECH
Gma17g00588 17 4892928 4898573 Gma13g00777 13 22013923 22018056 GST