Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00774 ATGTATTCGAGTGCAAGCCAGTTTGACGGCAATGCAGCCTTCTCCGGTGGTGGATTCATGCCTTCTCAGACCACCCAGGGCCCTGACTCTTCATTCGTTCCCTCCAAGAATCGTGACGCTCAGTCCTTGCTTCCTCTGACGGTGAAGCAGATATACGATGCGTCTCAGTCAAGTGATGATAAAATCAATTTGATCATTGACGGTGTGGACGTTACCAATGTCACTCTTGTAGGAAGGGTGTCCAACAAAGCTGGACGAATTACTGATGTTACTTTTGTGCTTGATGATGGTACGGGAAGGATTGAGTGTAATAAATGGCTTCATGAAGCTGTTGATACAAATGAAGCAGAGGCTATCTTGGAAGGAATGTATGCGAGGCTCCATGGACAATTGAAACATTTTCAGGGTAAAAGGACCTTAAATGTTTTCTCATTTAGGCCTGTGACTGACTTTAATGAGATTGCTAGTCATTTCACCGACTGCATATATGTGCATCTCTACAATTCCAAATTAAGGACTAGTGTCCCTAATCAGCAGCATTCCTCACCAATTCCTCCCACAATAGGTTATCAAGCTCAAGTTGTTCCGCCAACAAATCAGTTCTCTGATCAGCATGTCAATGGTCAGAAGGGTGTTACTGTTGAAGCCATGGTCTTAGATTTTTTGCATCATCCCGCAAACAGCTCAAGGAATGAGGGGGTCCATCGTGATCATATTGCACAACATCTTGGAATTTCTTTGGATAAGCTCATGCTGGCTGTTAAAAATCTTATTGATGAAGGTGCCATTTATGAAACCATAGGTGATCACTATAAGTCAATCATCAATGGTTGA 834 0.4305 MYSSASQFDGNAAFSGGGFMPSQTTQGPDSSFVPSKNRDAQSLLPLTVKQIYDASQSSDDKINLIIDGVDVTNVTLVGRVSNKAGRITDVTFVLDDGTGRIECNKWLHEAVDTNEAEAILEGMYARLHGQLKHFQGKRTLNVFSFRPVTDFNEIASHFTDCIYVHLYNSKLRTSVPNQQHSSPIPPTIGYQAQVVPPTNQFSDQHVNGQKGVTVEAMVLDFLHHPANSSRNEGVHRDHIAQHLGISLDKLMLAVKNLIDEGAIYETIGDHYKSIING 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00774 277 CDD RPA2_DBD_D 73 166 - -
Gma13g00774 277 Pfam OB-fold nucleic acid binding domain 74 145 IPR004365 GO:0003676
Gma13g00774 277 Gene3D - 206 275 IPR036388 -
Gma13g00774 277 PANTHER REPLICATION PROTEIN A-RELATED 4 273 IPR040260 -
Gma13g00774 277 SUPERFAMILY Nucleic acid-binding proteins 43 169 IPR012340 -
Gma13g00774 277 Pfam Replication protein A C terminal 165 269 IPR014892 -
Gma13g00774 277 Gene3D - 35 170 IPR012340 -
Gma13g00774 277 PIRSF RPA32 1 275 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Gma13g00774 277 MobiDBLite consensus disorder prediction 16 36 - -
Gma13g00774 277 PANTHER REPLICATION PROTEIN A 32 KDA SUBUNIT A 4 273 - -
Gma13g00774 277 SUPERFAMILY "Winged helix" DNA-binding domain 216 274 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00774 Gma-Chr13 21956898 21964018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00774 1 274 Core DNA Replication Machinery Family AT2G24490 43.463 3.04e-74 226
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00774 K10739 - gmx:100782819 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00774 13 21956898 21964018 Gma13g00774 13 21956898 21964018 ECH
Gma17g00590 17 4935394 4939641 Gma13g00774 13 21956898 21964018 GST