Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00747 ATGGGAATTGAAAGAGGAGGCTTGAAGGGATTCAGGAGCGGCTGGAGTGTGCCGCCGAAGAAGCCATGCGACTCCTGTAAGCTGGCTTCGGCGGCGCTTTTCTGCCACCTCGATTCCGCGTTTCTCTGCATCGCGTGCGATTCCAAGATTCACTGCGCGAATAAACTCGCGTCGCGCCACGAGCGCGTGTGGATGTGTGAGGTGTGCGAGCAGGCACCCGCTTCTGTCACGTGCAAGGCTGACGCGGCCGCCCTTTGCGTCACGTGCGACTCCGACATCCACTCCGCCAACCCACTCGCGCAACGCCACGAGCGCGTTCCCGTGGAGCCCTTCTTCGATTCCGCGGAATCCATCGTCAAAGCCTCCGCCACCGCCTCTTTCGGGTTCGTCGTCCCCTCCGACGATGGCGCTGCCTCCGACGTCTTCGCCCCCGACGACTCCGACTCCGCCGCCTGGCTCATCCCGAACCCCAATTTCGGGTCCAAACTCATGGACGCCCCCGAAATCAAGTCCAAGGAGATATTCTTCTCTGAAATGGACCCCTTCCTCGATTTTGATTACTCAAACTCCTTCCAAAACCACAACAGCGCCGTAAACGACAGTGTCGTTCCAGTTCAAACCAAACCCTCTCTCGCCCCTCCCCCCATCAACAATCACCAGCACCACCACCAATCTGAGACTTGCTTCGACATCGATTTTTGCCGCTCGAAGCTCTCCTCCTTTAACTACCCATCCCAGTCTCTTAGCCAAAGCGTTTCTTCGTCGTCGCTTGATGTCGGAGTGGTGCCGGACGGGAACACAGTGTCGGACATGTCGTATTCGAGTGGGATTGTGGTGTCGGGTGGACAAGGCGCGACGCAGTTGTGTGGGATGGATCGGGAAGCGAGGGTGCTGCGATACAGAGAGAAAAGGAAGAACCGAAAATTTGAGAAGACGATTCGATACGCATCGCGAAAGGCTTATGCGGAAACCCGGCCCAGGATAAAAGGCCGGTTCGCGAAACGAACCGAAATTGACTCGGATGTGGAGCGTCTCTATAGCCCTGGCGCTGCGGCGCTCATGCTGGACACTCCATACGGTGTCGTACCAACGTTTTAG 1098 0.5747 MGIERGGLKGFRSGWSVPPKKPCDSCKLASAALFCHLDSAFLCIACDSKIHCANKLASRHERVWMCEVCEQAPASVTCKADAAALCVTCDSDIHSANPLAQRHERVPVEPFFDSAESIVKASATASFGFVVPSDDGAASDVFAPDDSDSAAWLIPNPNFGSKLMDAPEIKSKEIFFSEMDPFLDFDYSNSFQNHNSAVNDSVVPVQTKPSLAPPPINNHQHHHQSETCFDIDFCRSKLSSFNYPSQSLSQSVSSSSLDVGVVPDGNTVSDMSYSSGIVVSGGQGATQLCGMDREARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRTEIDSDVERLYSPGAAALMLDTPYGVVPTF 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00747 365 CDD Bbox1_BBX-like 22 65 - -
Gma13g00747 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 8 365 - -
Gma13g00747 365 ProSiteProfiles CCT domain profile. 293 335 IPR010402 GO:0005515
Gma13g00747 365 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 8 365 IPR045281 GO:0009909
Gma13g00747 365 CDD Bbox1_BBX-like 66 108 - -
Gma13g00747 365 SMART bboxneu5 66 108 IPR000315 GO:0008270
Gma13g00747 365 SMART bboxneu5 18 65 IPR000315 GO:0008270
Gma13g00747 365 Pfam CCT motif 293 335 IPR010402 GO:0005515
Gma13g00747 365 ProSiteProfiles Zinc finger B-box type profile. 61 108 IPR000315 GO:0008270
Gma13g00747 365 Pfam B-box zinc finger 63 108 IPR000315 GO:0008270
Gma13g00747 365 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00747 Gma-Chr13 21672898 21674834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00747 1 365 C2C2-CO-like Transcription Factor Family AT5G57660 57.333 1.92e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Gma13g00747 zf-B_box 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00747 - - gmx:100792197 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00747 13 21672898 21674834 Gma13g00747 13 21672898 21674834 ECH
Gma17g00623 17 5259545 5260815 Gma13g00747 13 21672898 21674834 GST