Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00708 ATGGCTTACCCACATTACCGATCACAGTTCGGAGACACAACGTTCACTAAGGTCTTCGTTGGAGGCCTAGCTTGGGAGACTCCAACCGAAGAAATGCGCAAATATTTTGAGCAGTTTGGAGACATTCTTGAAGCTGTCATTATCACTGATAAGAACACAGGAAAATCTAAAGGCTACGGATTCGTAACATTCCGTGATCCAGAATCAGCTAGAAGGGCATGTACTGATCCAAACCCAGTTATTGATGGAAGAAGAGCAAATTGTAACATTGCTTCTCTAGGAAGACCTAGACCATCACCACCTAGAGGAAGAGGTACATTCCAAGGAGGAGGAGCACCAGGGACGACAGCAGCGTCGTACGGTGGTGTGCCAGCGGCAGGACCACCGCCGGCACTGGCGCCTCCACCACCGCCGCTAGTTTACCCGCCATATGGCTACCCTACCTACACCCCTGATTATGGGTACCACCAAGCCACGATGTATAACCCACAAATTCAGCAACCACAATACTACCACCAACAACTCTATGGACCATCATCTTCCACCATGGGTTCCCCTTATTACTATGGCTATTCTGTGCAAGCACCAAGGGGCACATTCTCTTCAACCCAACCACATCGCTTACCAGCTGGACCCTCCTATCTATACTACCCCACACCCATGGAAGGCTCTTTCCCTGCTTATCGTCCTCCACCTCAATTGCAACAACTTCCAATAAGGCAACCCCCTTCTTCCCCTAGTGATTCACAGACTCAGCAGCGTACCTCCTCCGAGACAGCAGGTGGAGTAGTTATAACTTCAGAAAGTTCAAATACCCAAGGGAGGAACTGA 831 0.4958 MAYPHYRSQFGDTTFTKVFVGGLAWETPTEEMRKYFEQFGDILEAVIITDKNTGKSKGYGFVTFRDPESARRACTDPNPVIDGRRANCNIASLGRPRPSPPRGRGTFQGGGAPGTTAASYGGVPAAGPPPALAPPPPPLVYPPYGYPTYTPDYGYHQATMYNPQIQQPQYYHQQLYGPSSSTMGSPYYYGYSVQAPRGTFSSTQPHRLPAGPSYLYYPTPMEGSFPAYRPPPQLQQLPIRQPPSSPSDSQTQQRTSSETAGGVVITSESSNTQGRN 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00708 276 Gene3D - 3 112 IPR012677 -
Gma13g00708 276 SUPERFAMILY RNA-binding domain, RBD 9 115 IPR035979 GO:0003676
Gma13g00708 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 74 IPR000504 GO:0003723
Gma13g00708 276 MobiDBLite consensus disorder prediction 240 276 - -
Gma13g00708 276 MobiDBLite consensus disorder prediction 91 131 - -
Gma13g00708 276 PANTHER GEO13361P1-RELATED 1 266 - -
Gma13g00708 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 93 IPR000504 GO:0003723
Gma13g00708 276 SMART rrm1_1 17 89 IPR000504 GO:0003723
Gma13g00708 276 MobiDBLite consensus disorder prediction 225 239 - -
Gma13g00708 276 MobiDBLite consensus disorder prediction 225 276 - -
Gma13g00708 276 PANTHER - 1 266 - -
Gma13g00708 276 CDD RRM_RBM24_RBM38_like 16 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00708 Gma-Chr13 21213781 21219163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00708 12 92 C2H2 Transcription Factor Family AT2G19380 39.506 5.82e-15 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00708 K25006 - gmx:100787086 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00708 13 21213781 21219163 Gma13g00708 13 21213781 21219163 ECH