Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00677 ATGGGTCGTGTTAAACTTGAGATAAAGAGAATAGAGAACCCCACAAATCGACAAGTTACATTCTCTAAACGTAGAAATGGCCTCATCAAGAAAGCATACGAGCTATCAATCTTATGTGACATTGATATTGCCGTTATAATGTTTTCTCCATCAGGACGTGTGAATCACTTTTCCGGTAGGAGAAGGATTGAGGATGTTTTCACTCGTTACATTAATCTTCCTGATCAAGTAAGAGATAACGCTGTAAGTTTTCCTGAGCTACCCTACCGCAGGGGTATTCAGAATAAGGAGTATCTGCTTAGGACCCTTCAGCAACTAAGGAGTGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAAGTTACAGCAACAACTTCAAATGACAGAGGAGCAAATAAGGTTATATGAACCCGACCCATTAAAGATGTCAACTATGGCGGATCTTGAAAACAGCGAAAAGTATCTTGTAGATGTCTTGACACGTGTCATACAGAGAAAGGAATACTTGTTGAGCAACCATCTATCTTCGTATGATCCATCTGGTATTCAGGGGATACCGACCTCTTTCGAGAATGTAGGTTGGTTGCAGGATGGGAATCAGAACCATACCCAGATTTTTGATGCATCTGCTCCTTTAGATCCTTTGAGGGACTTGTCTTCCACCGTGTATGGTTCATTTTCCCAAGGGACAAGTTCAAATGCTAATCCACGAATCATGGGGGAGTGCCACGTGTCAAATCCAAGTGATGGGAACCTTCAAGCATGGCCTCTAGGGTACACCTTGTATCCTCATCATCATATTCAGCATGGCATGGTGGGACCCGACATGACAGATATGATGCCAAATGGGCAGGTGAACATCCCAATCACTCCCTCACACGTGGAACAACCTAAGAATGAATCTGTAGAATATGACCAGTCCAAACAACCTCCTCCTCATCATCAACTTAATGCTCAATGA 1005 0.4269 MGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQVRDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNKLQQQLQMTEEQIRLYEPDPLKMSTMADLENSEKYLVDVLTRVIQRKEYLLSNHLSSYDPSGIQGIPTSFENVGWLQDGNQNHTQIFDASAPLDPLRDLSSTVYGSFSQGTSSNANPRIMGECHVSNPSDGNLQAWPLGYTLYPHHHIQHGMVGPDMTDMMPNGQVNIPITPSHVEQPKNESVEYDQSKQPPPHHQLNAQ 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00677 334 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Gma13g00677 334 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Gma13g00677 334 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Gma13g00677 334 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Gma13g00677 334 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677|GO:0046983
Gma13g00677 334 Coils Coil 119 146 - -
Gma13g00677 334 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Gma13g00677 334 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Gma13g00677 334 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL104 1 275 - -
Gma13g00677 334 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Gma13g00677 334 MobiDBLite consensus disorder prediction 299 334 - -
Gma13g00677 334 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Gma13g00677 334 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Gma13g00677 334 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 275 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00677 Gma-Chr13 20608994 20613179 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00677 1 303 Type I MADS-box Gene Family AT1G22130 58.387 8.71e-118 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Gma13g00677 SRF-TF 5.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00677 - - pvu:PHAVU_008G170400g 590.112
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00677 13 20608994 20613179 Gma13g00677 13 20608994 20613179 ECH