Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00660 ATGTCTCCGCCGCAGCCCAGCCGCGTCGACCCCAAAATCTGGCGGGCATGTGCCGGCGCCGCCGTGCAAATCCCCAAGCTCCATTCTAGGGTTTACTACTTTCCCCAGGGTCACATGGAGCATGCCTCTCCCTCGCATTACCTCAGCCCTCTCATCCGCTCTCTCCCCTTCGTCCCCTGCCACGTGTCGTCCCTCGATTTCCTCGCCGATCCTTTCTCCGACGAGGTCTTCGCCAAGTTCCTCCTCACTCCCCTCTCACAATCACAACAACAACCTTTCCAAAACGACACCAAGGAGGCTCGGAACGACGATGACGATGAGGACCGCGAGAACAACGGCGTCGTTTCGTTCGCGAAGATCCTCACTCCCTCCGACGCCAACAACGGCGGCGGCTTCTCCGTGCCGCGCTTCTGCGCCGACTCGTGCTTCCCTCCGCTCGACTTCCGCGCCGATCCGCCTGTCCAGCTCCTCTCCGTCGCCGACATCCACGGCGTCGAGTGGCGCTTCCGCCACATCTACCGCGGCACGCCGCGCCGCCACCTCTTCACCACCGGCTGGAGCAAGTTCGTCAACCACAAGAAGCTCGTCGCCGGCGACACCGTTGTTTTCGTCAAGGACTCCGACGGTATCGTCTCTGTCGGAATCCGTCGCGCAGCTCGGTTTGCCGCCGCGATCGAGACTCCGCCGCCTGCGGAACGGGAGGGATTTTCGCGGTCCACAACAGGGAGAGTGACCGCGGAGGCCGTGGCGGCCGCCGCGGAGTCCGCGGCGCGAAACGCACCGTTCGAGGTGGTGTATTATCCGAGGACCGGCTTTGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGAATCGATGAAGTGCGCGTGGGTAGGTGGAATGAGAGTGAAGATTTCAATGGAGACTGAGGATTCTTCTAGAATGACGTGGTATCAAGGGACTGTGTCTTCTGCATGTGCTTCTGAGAATGGACCTTGGCGCATGCTTCAGGTTAATTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCAAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCCCATTTGCACTTCATACAGTATTTTCCCCCAACAAAAGGCTTAGAGCTGACCAGGGTTCTGGGCTGTTAAGTAATAGGGAGCAAGATCCCTTCTTTCCTATGCCAGGGTTCTCTAACTCGGCAATGGGACACATGACAGGGTTCCCTAACTCAACAGTGGGACAAATGGATAAACCATTGTTGAGTTATGAAAGTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATATTCTCCATTGAGTTTTTCCAACTTTTTAAATGATAACTCTTATCTGTATATGGGTAGTGGTTCATTTGGGAACAATCCAGTGCAAAGTTTGGGAACTGTGACAACAGAGCTAAACATGAGCAGTTCTCAATCGGATGATTTGTCACCACATAGCCAGAGTAGTTTTCATTCCTTTGGCACAGAGTTTACTGGGACTCGGAACTGTGACACCAAAGTTGGTCCGGGTTCAATTCTGCTGTTTGGTAAGATCATACAGCCTGCTGAAAGTGATTTGCATGATGCTGATTGCATGGAACGTGATGGCAGCAGGGGCAGCAATAAACTGAAGACAGTCGAGGCATGTTATTTCTCAAAGTAG 1656 0.5441 MSPPQPSRVDPKIWRACAGAAVQIPKLHSRVYYFPQGHMEHASPSHYLSPLIRSLPFVPCHVSSLDFLADPFSDEVFAKFLLTPLSQSQQQPFQNDTKEARNDDDDEDRENNGVVSFAKILTPSDANNGGGFSVPRFCADSCFPPLDFRADPPVQLLSVADIHGVEWRFRHIYRGTPRRHLFTTGWSKFVNHKKLVAGDTVVFVKDSDGIVSVGIRRAARFAAAIETPPPAEREGFSRSTTGRVTAEAVAAAAESAARNAPFEVVYYPRTGFADFVVSAEVVEESMKCAWVGGMRVKISMETEDSSRMTWYQGTVSSACASENGPWRMLQVNWDEPEVLQNAKQVSPWQVELVSPPFALHTVFSPNKRLRADQGSGLLSNREQDPFFPMPGFSNSAMGHMTGFPNSTVGQMDKPLLSYESFPAGMQGARHDLYSPLSFSNFLNDNSYLYMGSGSFGNNPVQSLGTVTTELNMSSSQSDDLSPHSQSSFHSFGTEFTGTRNCDTKVGPGSILLFGKIIQPAESDLHDADCMERDGSRGSNKLKTVEACYFSK 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00660 551 Gene3D - 114 219 IPR015300 -
Gma13g00660 551 SUPERFAMILY DNA-binding pseudobarrel domain 109 222 IPR015300 -
Gma13g00660 551 CDD B3_DNA 116 209 IPR003340 GO:0003677
Gma13g00660 551 Gene3D - 291 355 - -
Gma13g00660 551 MobiDBLite consensus disorder prediction 88 110 - -
Gma13g00660 551 Pfam Auxin response factor 252 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Gma13g00660 551 Pfam B3 DNA binding domain 117 218 IPR003340 GO:0003677
Gma13g00660 551 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Gma13g00660 551 PANTHER AUXIN RESPONSE FACTOR 5 541 - -
Gma13g00660 551 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 5 541 IPR044835 GO:0003677|GO:0006355|GO:0009725
Gma13g00660 551 SMART B3_2 117 219 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00660 Gma-Chr13 20333483 20337624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00660 1 543 B3 DNA Binding Superfamily AT1G77850 48.116 3.80e-163 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Gma13g00660 B3 4.1e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00660 - - gmx:100805638 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00660 13 20333483 20337624 Gma13g00660 13 20333483 20337624 ECH