Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00625 ATGGACATGCTCATCATGGACGACCCTGATTTCCTCGACTTCTCCGATCACAGCATCACAACCACCCTTTCCTCCCACGAAGACTGCAACAAGAACAACAACAACCTCTGGTCCCCTCTTATCGACTGGGAATCCCTCAACGCATGCGAAAATGACTTCCAAACCCTAATTGACTCCGTCATGATCGACAACAACGACGACGTTTTGACCCCAGAAGAATCAGATCAAAGCGCCGCCGAAGAATCAGAATCAGACTCCACCGGCGGCGACGAGAGGGGCCTCCGCCTGCTGCACCTCCTCATGGCGGCGGCGGAGGCCCTCAGCTCCGGCACAGAGAGCCACGACCTGGCTCGAGCGATATTGGTTCGGCTCAACGAGTTGGTGTCCCCCACCCAGGGTACCAACATCGAACGTCTCGCGGCGCACTTTAGCCACGCCCTCCATTCCCTGCTAAACGGCACCGCAAGTGCGCACACACCCCCCATCGACACCCTCACCGCGTTCCAACTCCTCCAAGACATGTCCCCATACATCAAGTTCGCACACTTCACCGCAAACCAAGCCATCTTAGAAGCCGTGGCCCATGAAAAAAGAGTCCACATAATCGACTATGACATAACCGAAGGGGCCCAATGGGCCTCATTAATTCAAGCTCTTTCCTCAGCAGGCCCACCAGGCCCACACCTCCGCATCACCGCATTGTCCAGAGGCGGCGGTGGAGGAGGAAATTCCTCCTCTGCCTCTGGACAGAGATCTACAGCCTCCGTCCAAGAAACTGGAAGGAGGCTAACGGCTTTCGCGGCCTCTGTGGGGCAACCCTTCTCCTTTCACCACTCTCGGCTGGACCCCGACGAAACGTTTCGCCCTTCTAATCTAAAGCTGGTTCGGGGAGAAGCTTTGGTGTTCAACTGCATGCTGCATTTGCCGCACCTCAACTTCCGAGCCTCAGGTTCGGTTGGTTCGTTTTTAAGAGGCGCGAAAGAGTTGAACTCGAGGCTGGTGGTGCTTGTGGAGGAGGAAATGGGCTGTGTTGCTGCGGATTCGGGCTTTGTGGGCTTTTTTATGGACTCGCTGCACCACTATTCGGCGGTGTTCGACTCGCTTGAGGTTGGGTTTCCCATGCAGACATGGGCCCGAGCTTTGGTGGAGAAAGTGTTTTTGGGCCCGAGAATAACGGGCTCGGTGGCCCGGATGTATGGGAGTGGTACTGAGGAGGAGAAAGTGTCGTGGGGGGAGTGGTTGGGTGCGGCGGGTTTCAGGGGAGTTCCCCTGAGCTTCGCTAATCATTGCCAAGCGAACCTTTTGTTGGGTTTGTTTAACGATGGATATAGGGTGGAGGAGTTGGAGAATAATAGGTTGGTGTTGGGTTGGAAATCACGGCGTTTGCTTTCGGCTTCTGTTTGGAGTTCTAACTCTTGA 1419 0.5532 MDMLIMDDPDFLDFSDHSITTTLSSHEDCNKNNNNLWSPLIDWESLNACENDFQTLIDSVMIDNNDDVLTPEESDQSAAEESESDSTGGDERGLRLLHLLMAAAEALSSGTESHDLARAILVRLNELVSPTQGTNIERLAAHFSHALHSLLNGTASAHTPPIDTLTAFQLLQDMSPYIKFAHFTANQAILEAVAHEKRVHIIDYDITEGAQWASLIQALSSAGPPGPHLRITALSRGGGGGGNSSSASGQRSTASVQETGRRLTAFAASVGQPFSFHHSRLDPDETFRPSNLKLVRGEALVFNCMLHLPHLNFRASGSVGSFLRGAKELNSRLVVLVEEEMGCVAADSGFVGFFMDSLHHYSAVFDSLEVGFPMQTWARALVEKVFLGPRITGSVARMYGSGTEEEKVSWGEWLGAAGFRGVPLSFANHCQANLLLGLFNDGYRVEELENNRLVLGWKSRRLLSASVWSSNS 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00625 472 PANTHER SCARECROW-LIKE PROTEIN 26 17 469 IPR030028 -
Gma13g00625 472 MobiDBLite consensus disorder prediction 227 254 - -
Gma13g00625 472 ProSiteProfiles GRAS family profile. 87 469 IPR005202 -
Gma13g00625 472 MobiDBLite consensus disorder prediction 238 254 - -
Gma13g00625 472 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 17 469 IPR005202 -
Gma13g00625 472 MobiDBLite consensus disorder prediction 66 91 - -
Gma13g00625 472 Pfam GRAS domain family 96 468 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00625 Gma-Chr13 19813463 19815002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00625 93 471 GRAS Transcription Factor Family AT5G41920 35.787 1.12e-53 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gma13g00625 GRAS 2.4e-95 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00625 - - gmx:100816317 891.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00625 13 19813463 19815002 Gma13g00625 13 19813463 19815002 ECH