Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00624 ATGGTTAAGTCAGAGAACAAGATCCAGAGAGAACAACCATCATCATCAAAGCTAATGAGACCATTatcatcatcatcatcatcatcatcatcatcatcaAGTGACAACAACAACAAGAACAAGAAGAAGTACAAGGGAGTGAGAATGAGAAGCTGGGGGTCATGGGTGTCGGAGATTAGAGCACCAAACCAAAAAACAAGAATATGGTTGGGATCTTATTCAACTGCTGAAGCAGCAGCAAGAGCCTATGATGCTGCACTTCTATGCCTCAAAGGCTCCTCAGCCACCAATCTCAACTTCCCTTCTTCAAGCTCCTCCTTACAACACTACATCATCCCTCAAGACACTTCCATGATGTCCCCAAAATCAATCCAAAGAGTTGCTGCTGCTGCTGCCAACAATTTCTTGGACAACAATGCCATTGCTATTAATAATAATGTTACCACCCCACCTTCTCCAATTTCTCCACATTCTCCTCCTCTTGCTTCAACCCCTTCTTCTTCTTCATTTGTATCATCACCATCAATGTCATCATCATCTCCCTCAGACCAAATTGATGATGATGTCTCTCTTCTGACACCATTTGGGGCTTATACTACTGCTGTTGCTACTACTACTATTTGTGATCAAGAAAATGAATCAATGGCTATGATGGAATCATGGTATGGCTTGGAGGGCTTGCAATCTCCAAAGTATGTTGATCAAATGCTAAGTGGGGCATTCTTTGACATTGATTCAACACAGCTGCTTGATGATCTGTATGAAGAAAGTGATATTCGCTTGTGGAGTTTCTGCTGA 798 0.4048 MVKSENKIQREQPSSSKLMRPLSSSSSSSSSSSSDNNNKNKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSATNLNFPSSSSSLQHYIIPQDTSMMSPKSIQRVAAAAANNFLDNNAIAINNNVTTPPSPISPHSPPLASTPSSSSFVSSPSMSSSSPSDQIDDDVSLLTPFGAYTTAVATTTICDQENESMAMMESWYGLEGLQSPKYVDQMLSGAFFDIDSTQLLDDLYEESDIRLWSFC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00624 265 ProSiteProfiles AP2/ERF domain profile. 43 101 IPR001471 GO:0003700|GO:0006355
Gma13g00624 265 SUPERFAMILY DNA-binding domain 43 102 IPR016177 GO:0003677
Gma13g00624 265 MobiDBLite consensus disorder prediction 7 37 - -
Gma13g00624 265 CDD AP2 44 103 IPR001471 GO:0003700|GO:0006355
Gma13g00624 265 Gene3D AP2/ERF domain 42 102 IPR036955 GO:0003700|GO:0006355
Gma13g00624 265 SMART rav1_2 43 107 IPR001471 GO:0003700|GO:0006355
Gma13g00624 265 Pfam AP2 domain 43 92 IPR001471 GO:0003700|GO:0006355
Gma13g00624 265 PRINTS Ethylene responsive element binding protein signature 44 55 IPR001471 GO:0003700|GO:0006355
Gma13g00624 265 PRINTS Ethylene responsive element binding protein signature 66 82 IPR001471 GO:0003700|GO:0006355
Gma13g00624 265 MobiDBLite consensus disorder prediction 1 46 - -
Gma13g00624 265 MobiDBLite consensus disorder prediction 152 184 - -
Gma13g00624 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF014 23 265 - -
Gma13g00624 265 MobiDBLite consensus disorder prediction 161 184 - -
Gma13g00624 265 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 23 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00624 Gma-Chr13 19787438 19788489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00624 1 264 AP2-EREBP Transcription Factor Family AT1G21910 46.570 2.20e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gma13g00624 AP2 5.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00624 - - gsj:114381844 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00624 13 19787438 19788489 Gma13g00624 13 19787438 19788489 ECH