Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00611 ATGGCTCACAATTACATCGCCACCGATTCACCTCTCTCTCGTCGCATAGTTCGTGCTTTCCTCCACTTCCTCAACTCCGTTGAACCGGGTCCTGGGGTTGATGCTGAGGGGATTGAGGTTGCTAGGGAGTGTTTGGCAGAGGCTTTTAAGCTTAATCAATCTCCTGTGGCTGGTGATGATGTGAAATCTGATTCATTGATTGACATATTCAAGTCTCTTGAAGCTAAAAAGCAATGTGAACCTAGCAAGTCAGACGTTGGTCCTCAGCCGGATTCCGTGGATGCTTCCAGTTCATTCTCGGGTGAGAATCCTGCTCGTGGGAAGAATCATTCTGAGGCGTCGAAATCTACGTTACATTTGTATTCTCAATATTTGAATGCAGTATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTCTGGAGAAAAATTGCTATTTTTGGAGCAATACTGATGGGAGTGATGACCCAGTGCAACTGGAGAAAGCAAGTTGTTTATTCAATGAGGCTTGTATGGAGTTGGAAAGATCTGGTTGTCACCAGTTTAGTTTGAAGAATTTGGCTGAATCACTAAAAACACTAGGTAACAAGGCAATGCAATCTAAGAAATACTCTGATGCAATTGAGTTGTATAATTGTGCCATTGCAGTCCATGAAAAGAGTGCTGTTTACTACTGCAACAGGGCAGCTGCTTACACCCAGATTAACAAATATACAGAAGCGATCCAAGATTGTCTTAGATCCATTGAGATTGATCCAAACTACAGCAAGGCATATAGTCGTCTGGGTTTGGTTTATTATGCACAAGGAAATTACAGAGATGCTATTCATAAAGGGTTCAGAAAAGCCTTGCAGTTGGATCCAAATAATGAGTCTGTCAAAGAAAATATAAGGGTGGCCGAGCGTAAATTGTTAGAAGagcaacaccgtgcatatcaaaaccagAATTCAAGATCATCTCAAGAATTCCCAAACCAATCTGCGCAAGGAGGATCAAGAAGCCACAGCGTGCCACCTCCATTTTCCTCTATGTCATTTAATCCCCGTGATATTGCAAGCATGTTCATGAACATCACAAACCCTACAAATGCACAGCCGCAGGGGTCACATTCTCATCAGGAAAGGCAAGAAGATAGCAATGGTAGTGGAACTAGTGAGCCTGAAATAAGAATTGGGGGAAATATTAGTGTAAACATGGAGGATATGCCAGAGGATATAACAGGGGCCTTACAATCAATGATGGAAATGTTATCTGGGGCTGCACCCCCTGGGCAACCGCAAGATCAAACAAATGGAAGAACAGCACCAAACTAA 1314 0.4201 MAHNYIATDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIEVARECLAEAFKLNQSPVAGDDVKSDSLIDIFKSLEAKKQCEPSKSDVGPQPDSVDASSSFSGENPARGKNHSEASKSTLHLYSQYLNAVSKDELCGQFFAALEKNCYFWSNTDGSDDPVQLEKASCLFNEACMELERSGCHQFSLKNLAESLKTLGNKAMQSKKYSDAIELYNCAIAVHEKSAVYYCNRAAAYTQINKYTEAIQDCLRSIEIDPNYSKAYSRLGLVYYAQGNYRDAIHKGFRKALQLDPNNESVKENIRVAERKLLEEQHRAYQNQNSRSSQEFPNQSAQGGSRSHSVPPPFSSMSFNPRDIASMFMNITNPTNAQPQGSHSHQERQEDSNGSGTSEPEIRIGGNISVNMEDMPEDITGALQSMMEMLSGAAPPGQPQDQTNGRTAPN 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00611 437 MobiDBLite consensus disorder prediction 311 370 - -
Gma13g00611 437 Gene3D Immunoglobulin FC, subunit C 2 76 - -
Gma13g00611 437 Coils Coil 290 322 - -
Gma13g00611 437 MobiDBLite consensus disorder prediction 80 113 - -
Gma13g00611 437 SMART tpr_5 222 255 IPR019734 GO:0005515
Gma13g00611 437 SMART tpr_5 188 221 IPR019734 GO:0005515
Gma13g00611 437 SMART tpr_5 256 290 IPR019734 GO:0005515
Gma13g00611 437 MobiDBLite consensus disorder prediction 423 437 - -
Gma13g00611 437 PANTHER LD24721P 9 436 - -
Gma13g00611 437 MobiDBLite consensus disorder prediction 412 437 - -
Gma13g00611 437 Gene3D Tetratricopeptide repeat domain 183 344 IPR011990 GO:0005515
Gma13g00611 437 ProSiteProfiles TPR repeat profile. 256 290 IPR019734 GO:0005515
Gma13g00611 437 PANTHER LD24721P 9 436 - -
Gma13g00611 437 ProSiteProfiles TPR repeat profile. 188 221 IPR019734 GO:0005515
Gma13g00611 437 SUPERFAMILY TPR-like 187 301 IPR011990 GO:0005515
Gma13g00611 437 MobiDBLite consensus disorder prediction 89 107 - -
Gma13g00611 437 ProSiteProfiles TPR repeat profile. 222 255 IPR019734 GO:0005515
Gma13g00611 437 Pfam Homodimerisation domain of SGTA 14 71 IPR032374 -
Gma13g00611 437 Pfam TPR repeat 231 270 - -
Gma13g00611 437 MobiDBLite consensus disorder prediction 311 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00611 Gma-Chr13 19369647 19384484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00611 187 286 U-box Gene Family AT3G07370 30.000 2.13e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00611 K16365 - gmx:100799770 856.67