Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00578 ATGGCGCATAGGTTGCTGAGAGACCACGAGGCCGACGGCTGGGAGCGCTCAGATTTCCCCATCATCTGCGAATCCTGCCTCGGCGACAGCCCCTACGTTCGAATGACAAAAGCAGAGTATGACAAGGAGTGCAAGATTTGTACACGGCCATTCACTGTTTTTAGATGGAGACCTGGTCGAGATGCAAGATATAAGAAAACTGAGATCTGTCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGTGTGCCTTCTGGATCTTGAATATGGACTACCAGTTCAAGTTCGAGACTCGGCTCTTAGTATTGATTCCAATGATGCCATTCCAAAGAGTGATGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGTAAGGCTAGAGCTGGTATAGATTATGAATCCTCTTATGGTAAAGTACGCCCAAATGATACTATCCTGAAGCTTCAAAGGACAACTCCATATTACAAAAGAAATCGAGCGCATATTTGCAGTTTCTACATAAGGGGTGAATGTACTAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGTAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCTTTGAAGCTACTTGGCAAGGCAGGAGAGATGTCCACTCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTTTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGAGAAATTGAATCCATCAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACAACCAGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAATTGGTTATTAAGGGCCTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACAACGAAACCCGAGTCTGACGGTTCTGATCAAGCAAGGCAGCAGGCATCTGTAGCTCATAGTGGATTGTTGCCTCGGGCAGTTATATCACAGAAGCAAAGCCAGGACCAAACCCAAGGAATGCTTTACTATAACAATCTACCACCTCCTCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCGAAGAATGGGAGCTCTTGTTTCATCCCAAGATGCTCCTGGTGGGCCTTCTGGGTCAGAGGAGAACAACCCCGGTTTGGAGAAGCAGCAAATGCAACATTATGCCCATCCAATGATGCCTCCTCCACCTGGTCAATATCATCAGTATTATCCACCATATGGTTATATGCCACCACCTCCGCCTTATCATCAATACCCACAACCTCCATACAATGctgcagcggctccatcccagccacctgctgcggctccatcccagccaccagctgcAAATCATCCTTATCCACATTCTATGCAGCCAGGTTCTTCATAA 1404 0.438 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTKAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDSALSIDSNDAIPKSDVNREYFAEEHDRKARAGIDYESSYGKVRPNDTILKLQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMPVTGELSQQNIKDRYYGVNDPVALKLLGKAGEMSTLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESIKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTTKPESDGSDQARQQASVAHSGLLPRAVISQKQSQDQTQGMLYYNNLPPPQQERSYYPSMDPRRMGALVSSQDAPGGPSGSEENNPGLEKQQMQHYAHPMMPPPPGQYHQYYPPYGYMPPPPPYHQYPQPPYNAAAAPSQPPAAAPSQPPAANHPYPHSMQPGSS 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00578 467 MobiDBLite consensus disorder prediction 329 355 - -
Gma13g00578 467 MobiDBLite consensus disorder prediction 412 467 - -
Gma13g00578 467 Gene3D - 149 209 - -
Gma13g00578 467 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Gma13g00578 467 SMART rrm1_1 229 297 IPR000504 GO:0003723
Gma13g00578 467 Pfam Torus domain 143 194 IPR032297 -
Gma13g00578 467 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Gma13g00578 467 MobiDBLite consensus disorder prediction 299 389 - -
Gma13g00578 467 Gene3D - 212 309 IPR012677 -
Gma13g00578 467 CDD RRM_RBM22 227 300 - -
Gma13g00578 467 SUPERFAMILY RNA-binding domain, RBD 221 309 IPR035979 GO:0003676
Gma13g00578 467 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 49-LIKE 1 451 - -
Gma13g00578 467 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 451 IPR039171 GO:0003723
Gma13g00578 467 MobiDBLite consensus disorder prediction 304 320 - -
Gma13g00578 467 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Gma13g00578 467 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Gma13g00578 467 MobiDBLite consensus disorder prediction 412 458 - -
Gma13g00578 467 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00578 Gma-Chr13 18746546 18750974 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00578 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 35.000 2.31e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00578 K12872 - gmx:100789382 807.749