Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00557 ATGAGTAGCATGACAAGTGGGGGTGATACCCGGAAGATATCCAAAGGTCGTTGGTCATCATCATTAGATGAAAAAGTTGGAGTTGGAGGTAACGTGGGAGGAGAAGGTCCTCTGAAGAAAGGCCCATGGACTGCAGCAGAGGATGCAATTTTGGTAGAATATGTCAAAAAGCACGGACAAGGCAATTGGAATGCAGTACAAAAGCATTCAGGACTTGCCCGTTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCATTTGAGACCAGATCTAAAGAAAGGTGCATTTACTGCCGAGGAAGAGAACCGAATCCTTGAACTCCATGCTAAGATGGGAAACAAATGGGCTCGAATGGCTGCAGAGTTGCCAGGACGTACGGATAATGAGATCAAGAACTACTGGAACACAAGAATCAAAAGAATGCAACGAGCAGGCTTACCAATCTACCCTGAAGAATTGTGCCAACGGATACTTAATGGCAATCAAGAAAGTCAAAATGTTGGCACCATGACAAATGAAGCATGCCATCATGATGATCTGTCACAAACAAACAATTTTGATATACCAGATGTAGAATTCAAAAATTTCAAATTCCGTCATGGTCTACCACATGTACCATCGATTTTTGATATGCCTGAAAGCAGCTTGTTTGATCAAAGCTCTGACTCATCCCATAGTTATAACTTCTTGTTCCCAACCATGCGTCCTACAAAACGCCCTCGGGAGTCAGAAATGCTATACGATAGTTTTGGCAGTTGTTCAATTAATGCTGCCCCACTATTTGATCAGTATGGCAATTATACGTTTGAGAAAATTTCTGACCATCCTGGGTTGTCTCTTCCATGTGATCCCGTTCTTAACACCACTGATCAGTTTCATGGTGATAACCTTACCGGCAGCCATGCCGCATTAAATGGCAATGCCTCTGCTTCTGTGCCCATATTTGGGGCCATGAAGTTGGAGCTCCCTTCACTCCAATATCCAGAAACTCAACATGGTAGCTGGGGCCCGCCTATGTCCCCACTTCCTTCACTGGAGTCTGTTGATACATTGATTCAGTCTCCTACACTTGAGCCTATTCTATCAGATCCCATTTCTCCACAAAGCAGTGGTTTGCTAGAAGCGATAGTCTACAACTCGAAAAGCTTGAAAGGCTCAAACAATGATTTATTATTGCAAGAGACAATTGCTACAGCCAATGAAGTAGCTAATATTTCAACCTTGAATCATTCCTTTCAGACAGAATGGGATGAACTAGGCGATCCAAATTCCCCCTTAGGTCAATCTGCTGCTTCAGTCCTGACTGACTATACTCCTGTACGAATGTGCTCTGTGGATGGGTATCAATCAACTGAAACCAGTCAGGATCATGATGATAAGCATGAAGCACCTACCACCCAGTTCCCAGATAGTTCCAGTAAGAAAAAAATATTGAAACAGGTGGATTACACACAGCCAGATGCTTTACTTGACTTGGGTTGGTTTGGGAATAATACTAAGTATGAAAGCGATCAATTTGTTCAGCAAGATGCTTTGGGTGCACTTTTTGGTGACAATTGTCAGCATCAGCCATAG 1575 0.433 MSSMTSGGDTRKISKGRWSSSLDEKVGVGGNVGGEGPLKKGPWTAAEDAILVEYVKKHGQGNWNAVQKHSGLARCGKSCRLRWANHLRPDLKKGAFTAEEENRILELHAKMGNKWARMAAELPGRTDNEIKNYWNTRIKRMQRAGLPIYPEELCQRILNGNQESQNVGTMTNEACHHDDLSQTNNFDIPDVEFKNFKFRHGLPHVPSIFDMPESSLFDQSSDSSHSYNFLFPTMRPTKRPRESEMLYDSFGSCSINAAPLFDQYGNYTFEKISDHPGLSLPCDPVLNTTDQFHGDNLTGSHAALNGNASASVPIFGAMKLELPSLQYPETQHGSWGPPMSPLPSLESVDTLIQSPTLEPILSDPISPQSSGLLEAIVYNSKSLKGSNNDLLLQETIATANEVANISTLNHSFQTEWDELGDPNSPLGQSAASVLTDYTPVRMCSVDGYQSTETSQDHDDKHEAPTTQFPDSSSKKKILKQVDYTQPDALLDLGWFGNNTKYESDQFVQQDALGALFGDNCQHQP 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00557 524 MobiDBLite consensus disorder prediction 1 40 - -
Gma13g00557 524 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Gma13g00557 524 MobiDBLite consensus disorder prediction 1 15 - -
Gma13g00557 524 MobiDBLite consensus disorder prediction 449 474 - -
Gma13g00557 524 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 520 - -
Gma13g00557 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 87 IPR017930 -
Gma13g00557 524 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 520 - -
Gma13g00557 524 SUPERFAMILY Homeodomain-like 38 134 IPR009057 -
Gma13g00557 524 CDD SANT 42 87 IPR001005 -
Gma13g00557 524 Gene3D - 95 177 - -
Gma13g00557 524 CDD SANT 95 136 IPR001005 -
Gma13g00557 524 Pfam Myb-like DNA-binding domain 43 103 - -
Gma13g00557 524 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Gma13g00557 524 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Gma13g00557 524 Gene3D - 39 92 - -
Gma13g00557 524 SMART sant 92 140 IPR001005 -
Gma13g00557 524 SMART sant 39 89 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00557 Gma-Chr13 18248825 18267065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00557 38 519 MYB Transcription Factor Family AT5G06100 40.041 4.97e-96 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g00557 Myb_DNA-bind_6 3.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00557 K09422 - gmx:100800658 1071.61