Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00554 ATGACTGCTCGCTCAAGTTCTCTCTCGCTGAAAAATAACAAAGTTGCAAATTGCTCTCTCTCTGTTTCCAGTGAAAGAAAAGGATGTCAAGTGGAGCAACATACTGGCTTCTTGCAAGAACTTGATGAATTGCAAGGAGGTATGGAACAAAGAGGTTCTGAACCAAGAATGGGTGGAAGATACATAAACTTTGGTGTTAGGAGGCCTGGTTCTACCCCTCTTCCTGAATCATGGACTCGAGGTGTGTTCATATTTCCCAATCAAGAGGTGGCCGCAGATCGGGAAGGATTCTTTGAACAACACATTACAAATGACCCGCTTGGTGCATCACAATCTTCAATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTCTACTCAAATCCAAAGTGTTCAGTTTGTATAGAAAGATTTGAAGTGGGTTCTGAGGCCAGGAAGATGCCATGTGACCACATTTACCACTCAGACTGCATCGTTCCATGGTTAGTTCATCATAACTCATGTCCTGTTTGCCGTGGTAAGCTGCCACCCGAAGGACATGTTAGTTCTCGTGGTAGTCAAATTTGGAGAGGAAGGAATGTCAATGGTAATAGTGAAAATGATATCTATAGGGGTAGGGAGAATAGACAGTTCAACGATGGATGGAGAAATCTACTATCATTTTTGAATTTTTGCGGCCAATCCTTTCTTCTAATTCAAATACTTAATCGTTGGAGCTGA 726 0.4201 MTARSSSLSLKNNKVANCSLSVSSERKGCQVEQHTGFLQELDELQGGMEQRGSEPRMGGRYINFGVRRPGSTPLPESWTRGVFIFPNQEVAADREGFFEQHITNDPLGASQSSIDAMPTIKITHEHLYSNPKCSVCIERFEVGSEARKMPCDHIYHSDCIVPWLVHHNSCPVCRGKLPPEGHVSSRGSQIWRGRNVNGNSENDIYRGRENRQFNDGWRNLLSFLNFCGQSFLLIQILNRWS 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00554 241 CDD RING-H2_RNF126_like 133 174 - -
Gma13g00554 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 55 224 - -
Gma13g00554 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 180 IPR013083 -
Gma13g00554 241 Coils Coil 237 241 - -
Gma13g00554 241 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED 55 224 - -
Gma13g00554 241 SUPERFAMILY RING/U-box 113 180 - -
Gma13g00554 241 SMART ring_2 133 173 IPR001841 -
Gma13g00554 241 ProSiteProfiles Zinc finger RING-type profile. 133 174 IPR001841 -
Gma13g00554 241 Pfam Ring finger domain 132 174 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00554 Gma-Chr13 18135782 18138889 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00554 114 189 C3H Transcription Factor Family AT3G60080 50.000 3.11e-21 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00554 K11982 - gmx:100815972 443.351