Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Gma13g00553 | ATGTCAAGTGGGACAACATACTGGTGTTACACATGCAGGCAGCCAATCTGGCTTGAAGGGAGGGAAGCCATTTGCCCCTACTGTGACGGAGGCTTTGTGCAAGAACTTAATGAGCTGCGAGGAGTTGCGCGCCAACACGGCTTCTCATCGCGGATGGAAGATGCTCATCAAATGCCTGACATTATGGATGCTGTAAGAGCTGTTATGGAGCAAAGAGGTTCTGAACCGAGAATTCGGGTTAGAGATGCTGTTGATAACTTTATGAGGCAGAGAATGGCTGGAAGATACACAAACTTTGATGTTAGAAGGAGGtctggttctggttctggttctggttctATCCTTATTCCTGATGAGACTTGGGGTGTCTTTAGTTCTGGTCCTTATTTGATATTTCATGGTCAAGCACCAGGATTCACCAATTCTAATGGTAGCTCAAGAGGTGGTCCTAGGCGTGTTGATTTTGGTGACTACTTTCTGGGTCCTAGACTAGAAGGACTAATTGAACAACACATTTCAAATGACCGGCTTGGTCCACCCCCTGCATCGCACTCTTCGATTGATGCAATGCCAACTATTAAGATCACACATGAACACCTACAGTCTGATTCACACTGTCCAGTTTGTAAGGAACGATTTGAACTGGGATCCGAGGCCAGGAAGATGCCATGTAACCACGTTTACCACTCAGATTGTATTGTTCCATGGTTAGTTCTGCATAACTCGTGTCCTGTGTGCCGTGTTGAGCTGCCACCGAAAGAACATACTAGTTCTCGTGGTAGACGAATTTGGGGTAATGGCAGTGGTAGTGGTAGTAGCAATGATATCTCTAGGGGAAGAGAGAATAGACAGATGAACAATGGAAGGAGAAATCTGCTATCTTATTTGTGGCCATTCCGGACCTCTAGTTCAAGTACTTAG | 921 | 0.4441 | MSSGTTYWCYTCRQPIWLEGREAICPYCDGGFVQELNELRGVARQHGFSSRMEDAHQMPDIMDAVRAVMEQRGSEPRIRVRDAVDNFMRQRMAGRYTNFDVRRRSGSGSGSGSILIPDETWGVFSSGPYLIFHGQAPGFTNSNGSSRGGPRRVDFGDYFLGPRLEGLIEQHISNDRLGPPPASHSSIDAMPTIKITHEHLQSDSHCPVCKERFELGSEARKMPCNHVYHSDCIVPWLVLHNSCPVCRVELPPKEHTSSRGRRIWGNGSGSGSSNDISRGRENRQMNNGRRNLLSYLWPFRTSSSST | 306 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Gma13g00553 | 306 | ProSiteProfiles | Zinc finger RING-type profile. | 206 | 247 | IPR001841 | - | |
| Gma13g00553 | 306 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RHC1A-RELATED | 1 | 305 | - | - | |
| Gma13g00553 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 169 | 253 | IPR013083 | - | |
| Gma13g00553 | 306 | Pfam | Ring finger domain | 205 | 247 | IPR001841 | - | |
| Gma13g00553 | 306 | SMART | ring_2 | 206 | 246 | IPR001841 | - | |
| Gma13g00553 | 306 | SUPERFAMILY | RING/U-box | 186 | 255 | - | - | |
| Gma13g00553 | 306 | MobiDBLite | consensus disorder prediction | 261 | 285 | - | - | |
| Gma13g00553 | 306 | Pfam | zinc-ribbon | 5 | 36 | IPR039525 | GO:0061630 | |
| Gma13g00553 | 306 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 1 | 305 | - | - | |
| Gma13g00553 | 306 | MobiDBLite | consensus disorder prediction | 251 | 285 | - | - | |
| Gma13g00553 | 306 | CDD | RING-H2_RNF126_like | 206 | 247 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Gma13g00553 | Gma-Chr13 | 18124332 | 18127476 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Gma13g00553 | 176 | 300 | C3H Transcription Factor Family | AT1G68180 | 40.000 | 2.63e-25 | 99.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Gma13g00553 | K11982 | - | gmx:100819514 | 605.134 |