Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00545 ATGGCCTTAGCTATGGTGGGAGAGGCACTTATCTCTGCTTCTGTTGAGATCTTAATAAAAAAGATAGCTTCAAGAGAGTTTCGAGATTTCTTCTCCAGCAGAAAGCTGAATGTTTATGTGTTGGATGAGTTGAAGATGAAGTTGTTGGCACTTAATGCTGTTCTTAATGATGCTGAAGAGAAGCAGATCACTGATCCTGTAGTGAAGGAATGGCTTGAAGAATTGAAAGATGCTGTCTTGGATGCAGAGGATTTGTTGGATGAAATCAACACAGATGCTTTGAGATGCGAGGTGGAGGGAGAATCTAAAACATTTGCTAACAAGGTCAGATCAGTGTTTTCTTCTAGCTTTAAAAATTTCTATAAGAGCATGAATTCCAAGCTTGAAGCAATTTCCGAAAGGCTGGAACATTTTGTGAGACAAAAAGATATTCTTGGCTTGCAAAGTGTTACTAGGAGAGTCTCTTATAGAACAGTAACAGATTCGTTGGTTGAATCTGTTGTGGTTGCTAGAGAGGATGACAAGGAGAAACTACTGAGCATGCTTCTATATGATGATGATGCCATGTCTAATGATATAGAAGTGATCACAGTATTGGGCATGGGAGGTCTAGGAAAAACAACCCTTGTTCAATCCCTTTACAATGTAAGTGAAGTGCAGAAACATTTTGATTTGACAGCTTGGGCATGGGTGTCTGATGATTTTGATATTCTTAAGGTAACAAAGAAAATTGTTGAGTCTCTCACATTGAAAGATTGTCATATTACTAATCTTGATGTTCTTCGTGTTGAATTAAAGAATAACCTAAGAGATAAGAAATTTTTGCTTGTGCTTGATGACCTTTGGAATGAAAAGTACAATGATTGGCATCATCTAATAGCACCTTTTAGCAGTGGGAAAAAGGGAAGTAAGATCATTGTGACAACCCGACAACAAAAAGTTGCACAAGTCACACATACATTTCCCATTTATGAGCTGAAACCTCTTAGTGATGAAAATTGTTGGCACATACTGGCAAGACATGCATTTGGAAATGAAGGTTATGACAAATATTCAAGTCTAGAAGGAATTGGTAGGAAAATTGCAAGAAAATGCAACGGCCTACCATTAGCTGCTAAAACATTGGGAGGTCTTTTGCGATCAAATGTTGATGTTGGCGAATGGAATAGAATCCTGAATAGCAATTTGTGGGCACATGATGATGTTTTACCAGCTTTACGCATAAGTTATCTCCATCTTCCTGCACATTTGAAAAGGTGTTTTTCCTATTTCTCAATTTTTCCAAAACATCGTTCGCTGGATAGGAAGGAATTGATTTTGTTATGGATGGCTGAAGGCTTTCTTCAACATATCCATGAAGATAAGGCAATGGAATCATCTGGTGAGGACTGTTTTAAAGAATTATTATCTAGATCCTTAATTCAAAAAGATATTGCTATTGCAGAGGAAAAATTTCGAATGCATGACCTCGTCTATGATTTAGCTAGACTTGTATCAGGAAGAAGTTCTTGCTACTTTGAAGGCAGTAAAATTCCAAAAACTGTTCGCCATTTATCATTTTCTAGGGAGATGTTTGATGTCTCTAAAAAGTTTGAGGACTTCTATGAGCTAATGTGTTTGCGGACCTTCCTACCACGTTTGGGATATCCATTAGAAGAATTTTATTTGACCAAAATGGTATCACATGACTTGTTACCAAAACTTAGATGCTTGAGAATACTGTCATTGTCTAAATACAAAAATATCACTGAGCTGCCCGTTTCAATTGACAGTTTGTTGCACTTGCGGTATCTGGATCTGTCCTACACTTCCATTGAAAGCTTGCCCACTGAAACATTTATGCTTTACAATTTGCAGACATTGATACTATCAAATTGCGAATTTCTTATTCAATTGCCACAGCAGATAGGAAATCTGGTTAATTTGCGTCACCTTGACCTCAGTGGCACTAATTTGCCAGAGATGCCAGCACAAATCTGCAGACTACAAGATCTTCGTACTTTGACAGTTTTTATTGTTGGAAGACAAGATGGACTAAGTGTTAGAGATTTAAGGAATTTTCCTTATCTGCAGGGTCGGCTTTCCATTTTGAACTTGCACAATGTTGTTAATCCTGTGGATGCATCTCGTGCCAATTTAAAGAACAAAGAGAAGATTGAGGAGCTTATGCTGGAATGGGGCAGTGAACTACAAAATCAGCAGATTGAAAAAGATGTACTTGACAACTTGCAACCATCAACTAATTTAAAGAAACTCGACATCAAATATTATGGTGGCACTAGCTTTCCAAATTGGATCGGAGATTCTTCATTTTCAAACATCATAGTCCTTCGTATTAGTGATTGCAACAATTGCTTGACACTTCCATCATTTGGACAACTACCTTCCCTCAAGGAGCTTGTCGTCAAAAGGATGAAAATGGTGAAGACAGTTGGTTATGAGTTCTACAGCAGCAATGGAGGTTCTCAGTTGTTACAGCCATTTCCATCGTTGGAGAGTTTGGAATTTGAAGATATGTTAGAGTGGCAGGAGTGGCTACCATTTGAAGGTGAAGGCAGCTACTTTCCTTTTCCTTGTCTCAAACGTTTGTATCTATACAAGTGCCCCAAGCTGAGAGGAATCTTGCCCAATCATCTACCTTCATTGACAGAGGCTAGTTTCTCAGAGTGCAACCAACTAGTGACAAAGTCATCTAATCTGCACTGGAATACATCAATTGAAGCAATACATATTAGAGAGGGACAAGAAGACTTGTTGTCTATGCTTGACAATTTCTCTTATTGTGAACTATTCATTGAAAAGTGTGATAGCTTGCAGTCTTTGCCTAGAATGATACTAAGTGCAAATTGTCTTCAAAAGTTGACTCTTACAAATATCCCATCTTTGATTTCCTTCCCAGCTGATTGTTTACCCACATCATTGCAATCACTTGACATTTGGCACTGTAGAAAGTTAGAATTTCTATCCCACGATACATGGCATAGATTCACATCACTTGAAAAGCTAAGAATATGGAATAGCTGTCGTTCCTTGACATCCTTTTCATTAGCTTGTTTCCCTGCCCTTCAAGAACTTTACATCCGTTTTATTCCCAACTTGGAAGCAATTACTACTCAAGGTGGAGGAGCAGCTCCCAAATTAGTTGATTTTATTGTCACTGATTGTGACAAACTTAGATCACTACCAGATCAGATTGATCTCCCTTCCCTTGAACACTTGGACCTTTCTGGGCTTCCAAAGCTAGCATCATTGTCCCCAAGGTGTTTCCCTTCCAGTTTACGATCACTTTTTGTTGATGTTGGTATACTATCATCTATGTCTAAACAAGAGATAGGTTTGGTATTCCAATGCCTCACTTCTCTGACACATCTTTTATTTAAGGGTCTCAGTGATGAAGATCTTATTAACACTCTTCTGAAGGAGCAATTGCTGCCTATTTCTCTCAAAATTCTGGTCCTGCACAGTTTTGGTGGTTTAAAGTGGTTGGAAGGAAAAGGGCTTCAGAATCTCACTTCTCTCCAACAGTTGTACATGTACAATTGTCCAAGCTTTGAGTCCTTACCTGAAGATCATCTTCCTTCCTCTCTTGCAGTACTCAGTATGCGGGAGTGTCCTTTACTGGAAGCAAGGTATCGAAGTCAGAACGGGAAATACTGGTCTAAAATTGCTCACATTCCTGCAATCAAGATAAATGAAAAAGTGATAATATGA 3711 0.3845 MALAMVGEALISASVEILIKKIASREFRDFFSSRKLNVYVLDELKMKLLALNAVLNDAEEKQITDPVVKEWLEELKDAVLDAEDLLDEINTDALRCEVEGESKTFANKVRSVFSSSFKNFYKSMNSKLEAISERLEHFVRQKDILGLQSVTRRVSYRTVTDSLVESVVVAREDDKEKLLSMLLYDDDAMSNDIEVITVLGMGGLGKTTLVQSLYNVSEVQKHFDLTAWAWVSDDFDILKVTKKIVESLTLKDCHITNLDVLRVELKNNLRDKKFLLVLDDLWNEKYNDWHHLIAPFSSGKKGSKIIVTTRQQKVAQVTHTFPIYELKPLSDENCWHILARHAFGNEGYDKYSSLEGIGRKIARKCNGLPLAAKTLGGLLRSNVDVGEWNRILNSNLWAHDDVLPALRISYLHLPAHLKRCFSYFSIFPKHRSLDRKELILLWMAEGFLQHIHEDKAMESSGEDCFKELLSRSLIQKDIAIAEEKFRMHDLVYDLARLVSGRSSCYFEGSKIPKTVRHLSFSREMFDVSKKFEDFYELMCLRTFLPRLGYPLEEFYLTKMVSHDLLPKLRCLRILSLSKYKNITELPVSIDSLLHLRYLDLSYTSIESLPTETFMLYNLQTLILSNCEFLIQLPQQIGNLVNLRHLDLSGTNLPEMPAQICRLQDLRTLTVFIVGRQDGLSVRDLRNFPYLQGRLSILNLHNVVNPVDASRANLKNKEKIEELMLEWGSELQNQQIEKDVLDNLQPSTNLKKLDIKYYGGTSFPNWIGDSSFSNIIVLRISDCNNCLTLPSFGQLPSLKELVVKRMKMVKTVGYEFYSSNGGSQLLQPFPSLESLEFEDMLEWQEWLPFEGEGSYFPFPCLKRLYLYKCPKLRGILPNHLPSLTEASFSECNQLVTKSSNLHWNTSIEAIHIREGQEDLLSMLDNFSYCELFIEKCDSLQSLPRMILSANCLQKLTLTNIPSLISFPADCLPTSLQSLDIWHCRKLEFLSHDTWHRFTSLEKLRIWNSCRSLTSFSLACFPALQELYIRFIPNLEAITTQGGGAAPKLVDFIVTDCDKLRSLPDQIDLPSLEHLDLSGLPKLASLSPRCFPSSLRSLFVDVGILSSMSKQEIGLVFQCLTSLTHLLFKGLSDEDLINTLLKEQLLPISLKILVLHSFGGLKWLEGKGLQNLTSLQQLYMYNCPSFESLPEDHLPSSLAVLSMRECPLLEARYRSQNGKYWSKIAHIPAIKINEKVII 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00545 1236 Pfam NB-ARC domain 172 393 IPR002182 GO:0043531
Gma13g00545 1236 Gene3D - 328 408 IPR042197 -
Gma13g00545 1236 PANTHER DISEASE RESISTANCE PROTEIN RP 51 930 IPR044974 GO:0006952
Gma13g00545 1236 Gene3D Ribonuclease Inhibitor 912 1039 IPR032675 -
Gma13g00545 1236 Coils Coil 41 61 - -
Gma13g00545 1236 Gene3D Ribonuclease Inhibitor 1040 1230 IPR032675 -
Gma13g00545 1236 PRINTS Disease resistance protein signature 195 210 - -
Gma13g00545 1236 PRINTS Disease resistance protein signature 268 282 - -
Gma13g00545 1236 PRINTS Disease resistance protein signature 365 379 - -
Gma13g00545 1236 PRINTS Disease resistance protein signature 613 629 - -
Gma13g00545 1236 PANTHER - 51 930 - -
Gma13g00545 1236 Gene3D - 39 135 - -
Gma13g00545 1236 Pfam Leucine rich repeat 594 652 IPR001611 GO:0005515
Gma13g00545 1236 SUPERFAMILY L domain-like 486 912 - -
Gma13g00545 1236 Pfam Rx N-terminal domain 31 103 IPR041118 -
Gma13g00545 1236 SMART LRR_typ_2 1067 1091 IPR003591 -
Gma13g00545 1236 SMART LRR_typ_2 592 615 IPR003591 -
Gma13g00545 1236 SMART LRR_typ_2 639 662 IPR003591 -
Gma13g00545 1236 Gene3D - 149 321 IPR027417 -
Gma13g00545 1236 Gene3D Ribonuclease Inhibitor 549 911 IPR032675 -
Gma13g00545 1236 CDD RX-CC_like 13 89 IPR038005 -
Gma13g00545 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 423 IPR027417 -
Gma13g00545 1236 Gene3D - 409 497 IPR036388 -
Gma13g00545 1236 SUPERFAMILY L domain-like 929 1221 - -
Gma13g00545 1236 Coils Coil 68 92 - -
Gma13g00545 1236 ProSiteProfiles Leucine-rich repeat profile. 594 615 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00545 Gma-Chr13 17979090 17984318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00545 192 800 WRKY Transcription Factor Family AT5G45050 21.296 2.45e-12 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00545 - - gmx:100803330 2452.55