Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00542 ATGCCTCCAAAATCAATGTTGTTGGATCAAAAGGGAGTCTCTAAGGATAAGGAGCAGAGGAGGTTTGGATCTCTCGTGAGACAACAACAATCATCATGTCATTGTGGTTTTCTTGAGTTTAAGAATCAGGAATCTACTCAATTTCAATGTGTTGGTCCCAGAATACCGAGTGGTGGTGGTGGTGGTGGTGCTAGATACCGGTTTCCAAAGGAACCTAGCCAAGGCTTTTGCTCTGACTATGGCATAACCCTTCAATCCCGAAGAGACCCTAGATGCAAGTTCTGGGAAATTGCTAACAATGCCTCTCTGCATTTATCCTCAAAGAGGTCCATTGATAATGTGCTATGTACTCCCTCACATGCACCTTCTGTGAACAATGGCGAGAAGCCTTACTCCAGAGAACAATACCataataataataataataataataataataaGAACTATGAGAGAGAGAGTTCTTCAATGAAGAGGCGAATTGATGATGTACTAAGTACTCCCTCTCATGCATGTTCTATGAACACTAGGGAGAAGCTTAACTTTAGAGAACAATGCCATGATAATAATAAGAAGAATTATGAGAGGAAGGGTTCTTTGGGCTGGAAACCACTTAATAAAGGGAACAATACTTCTGAAAGGTTTTATTCTCGAAGCACAGTAAATGGTAGGGACAGGAACATGAATATAGTGGAAAGCAGTGCCAACAGTGTGACTGAAGAGACAAGGAAGAGGCCGAGGCTAAGTTGGGGTGAAGGACTTGCTAAGTTTGAGAAAAAGAAAACTGAGGGTGATGGTGTAAGTGCTGCTACTACTGCTACTCCTGCTTCTTGTGCATGCAATTCCTTCTCAGCAAGTGTCGACAATACATTGTGCATGAAAGCTGAAACTGTGGACAATGATGCTTGTGATTTGGAAGGTTCACCTGATACTGTGTCTCCAAAAAATCATCAGCTAAAGTTTCCTTTGAGTTCACAGAGGACAGATGCCAACTCTTGGAATAGGTTGAGTTCTTCAATTGCTGAGTTGCTACATTCTGACAAGTCTAGCTCTGTAGATTCTAGTCCAGAAGGATTCACTACAATGACTAGGTTGCAGATATGGAAAAATGTCATTTCACAAGTACTGGAGCAGACAGAAACTGAAATTTGTTCACTTGAGAATGAACTGAAGCCACTACAATCTGAATTTGGGGATGGAATGCCATGTCACAATGCAAAAACTTGTGATATAGAATTTGGAGGTTATGATAAGGTTACTCGTCGTCCAGAACCATCACAAATTGACCCTTTCCATGACGACAACAACATAGAGAAGATGATGCCTCTTTCTACTAACTTGCATGGTATGCATGACACTACCAAGGAAAATGATATCAACAATCCTGAAACATCAACATTGAAATTTCTAGAAGCAGAACCCTTGATAAAAATGGTATCTTCTCTTAGTGGTGGTAGTCCATTTTCATCATTAATGGCAATTGAAGATGGGATGAGAGCTCACACTAGTGCAGGCTTTTATTCCAGTATCAACGATGATACTTTACCTAACACCATTATTTCTTCCAATAGAGAAACAGCACAAAGTGCATGTGCAGTATTTGAGAAGTTCTTGCCTAATGAAACTAGCAAAACTATAAGTAATGTTGGAGTTAGCAGTAGTTCGCTCTCTCATGTTGATGAATTCATTAAGGACAAGTTTGCAGAGAAAAAAAGGTTTGCAGGATTTAAGGAGAAAGATTTAACAATTAAGCATAAAGCCTTTGATCACCTGTGGAAGAAAGATATGTGCTTAAGATATCTGAGGAAATGCACCCGAACCTCTCCCAACAATCTAAAATTGCATCTCAAAGTTGCCACTAGTTGTTGTCAGAAGAACTTATCCTCTACTCATTATTGCTGTTTTCCTTTCCAACCTGCAGGAAGTAAGATAAGCTTAGTTCCCACATCTGAGATGATAAATTGTACAAGCCAACTGCTTTCTAAACCCCAAGATGAAGTTAACAGAAAAATCTTGAAGTTGCCAACATTAATTTTGGATCAAAAGGATAAAATGTTTTCAATGTTCCACTCTAATAATGGGTTGGTTGAAGATCCATGGGTTGTTGAGAGAGAAAAAGCTATGATCAACCCTTGGACGTCAGAGGAGAGAAAGATTTTCTCGGAGAAATTTGAAGCCTTTGGAAAAGATTTTCGAAAAATTGCTTCTTTCCTTGATCACAAGACAATTGCTGACTGTGTTGAATTCTACTACAAAGATCATAAGCCCAATTGTTTAGAGAAAGATAAGAAGAAGAAGAAGAAGAATATGAAGAAGAAAAAGGGTTGTAAGAGTCAAAAGTCAAAAACAGTCAAAACTGTCGTGAAGGTATTGGGTAAAAAAGGGAACCATAAAGCAAATGTTGATTCACAGAAGAAATCAATGATGGTGTGCGGCACTGTAGCTAATCAAAGAACACGTTCAGGAAGACTCCTCCTCTGGAGGAAATCCGATGAAAGCGAGAGGCTTGCAGCTGATGCATTGGTTGGTATGTGTGATTCTCTTTCACTTGAGGCTACAAGGCCACCATGCCAACAACCTGTGATACCTAACATTACTCATCAGGATATTGATGATGGAACTTGTGAGTGGACAGATGAGGAGAAGGCAACATTTCTTCAAGCTGTATCATCTTTCGGTGAGGATTTTAGGATGATTGCACAACATGTAGGAACAAAGTCCAAAGATCAGTGCAAGAGATTTTTCATCAAGGGTCAGAAATCCCATAGGTTGGATCTCATGCGCCACAGACTTGAAAATATTAGATCTCTACTTAATGAAATAAATCTTGGCAGGAGTGCTAACACTAATGATGCACGTGTTGTGGAGGCCATTGGCAATGATAAGTTAGACACAGAAACAAATGATCACCAGCCTTCGTCTGCTGCGAACTTGAGCCATGATAAATCCAAACATATGGAAGCTTGGAATCAGTTGATTGACTTAAATGAATCAAAGGAAATTAATAAAGAATTTGATCATGAAGATAAAAACATTGTTTCTAGCACATATAACGGTGAGTCTAAACTGGTGGACACTGATGGTTATGGGGTTGTCTTGTACAATTCTAATAAGTCGAGTTCAGTCAAGGACAAGAGAGCTAAAACTATGCCAGATATCATGGAAGTTGGAAAAGATAAAGGGGGAGATGCAGTTACAGAATTGGTGTCGTCTGCTTCTGAGATAATTGAACCATGTCACTCTCATTCTGTTGCTGAGGATAGACTAGTTTCTGTGATGTTGACATCATTTCCTACACGGCTCGATGATAAAGATGGTAAACATGGAGCTGATATGGATGATGATGTGGTTGAATTGAAAAGCCAAAGTCATGATTCAAACACCAAAGCAAATACTTGCTTATCATCTGTGGTAGTTTCTTACTCAGCATTGACTTTTGGTGCTGAAAATCAGTCCAAACTATTCCTGAAAAGGTCCAATTATTCAGGACTATCCATAGAGGATCCTCTCCCAACTGCAAATTCAATGTTACAAAATACCGTTCGTGCTGCGCATGCTGTTCAACAAGAGAAATCAGGTACCCGAGATGGACTGTCTTTTAAGGAGCCTGTTAAAAAACAAGTGAATGTGGATATGAGCTGCGTTGGTATAGTAACTGAACCAACTCTTTTGTCGCAGAAGTTTCAACAAATTGATGACCATCACAACACACAGTTGCCGTGTTTGTCAGGTTCAGAAAAAACGCCTGCAAATCATATTGTTTTGAAACTGTTTGGGAAGACAATGGCCATTCCTTCATCCACTCAGAGGCCTGATTCAAGTGAAGATTCAAAGCATTTTATTGGGGAAAAAGAGAAAAAGAAAGAAGAGAAGTAG 3873 0.3935 MPPKSMLLDQKGVSKDKEQRRFGSLVRQQQSSCHCGFLEFKNQESTQFQCVGPRIPSGGGGGGARYRFPKEPSQGFCSDYGITLQSRRDPRCKFWEIANNASLHLSSKRSIDNVLCTPSHAPSVNNGEKPYSREQYHNNNNNNNNNKNYERESSSMKRRIDDVLSTPSHACSMNTREKLNFREQCHDNNKKNYERKGSLGWKPLNKGNNTSERFYSRSTVNGRDRNMNIVESSANSVTEETRKRPRLSWGEGLAKFEKKKTEGDGVSAATTATPASCACNSFSASVDNTLCMKAETVDNDACDLEGSPDTVSPKNHQLKFPLSSQRTDANSWNRLSSSIAELLHSDKSSSVDSSPEGFTTMTRLQIWKNVISQVLEQTETEICSLENELKPLQSEFGDGMPCHNAKTCDIEFGGYDKVTRRPEPSQIDPFHDDNNIEKMMPLSTNLHGMHDTTKENDINNPETSTLKFLEAEPLIKMVSSLSGGSPFSSLMAIEDGMRAHTSAGFYSSINDDTLPNTIISSNRETAQSACAVFEKFLPNETSKTISNVGVSSSSLSHVDEFIKDKFAEKKRFAGFKEKDLTIKHKAFDHLWKKDMCLRYLRKCTRTSPNNLKLHLKVATSCCQKNLSSTHYCCFPFQPAGSKISLVPTSEMINCTSQLLSKPQDEVNRKILKLPTLILDQKDKMFSMFHSNNGLVEDPWVVEREKAMINPWTSEERKIFSEKFEAFGKDFRKIASFLDHKTIADCVEFYYKDHKPNCLEKDKKKKKKNMKKKKGCKSQKSKTVKTVVKVLGKKGNHKANVDSQKKSMMVCGTVANQRTRSGRLLLWRKSDESERLAADALVGMCDSLSLEATRPPCQQPVIPNITHQDIDDGTCEWTDEEKATFLQAVSSFGEDFRMIAQHVGTKSKDQCKRFFIKGQKSHRLDLMRHRLENIRSLLNEINLGRSANTNDARVVEAIGNDKLDTETNDHQPSSAANLSHDKSKHMEAWNQLIDLNESKEINKEFDHEDKNIVSSTYNGESKLVDTDGYGVVLYNSNKSSSVKDKRAKTMPDIMEVGKDKGGDAVTELVSSASEIIEPCHSHSVAEDRLVSVMLTSFPTRLDDKDGKHGADMDDDVVELKSQSHDSNTKANTCLSSVVVSYSALTFGAENQSKLFLKRSNYSGLSIEDPLPTANSMLQNTVRAAHAVQQEKSGTRDGLSFKEPVKKQVNVDMSCVGIVTEPTLLSQKFQQIDDHHNTQLPCLSGSEKTPANHIVLKLFGKTMAIPSSTQRPDSSEDSKHFIGEKEKKKEEK 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00542 1290 MobiDBLite consensus disorder prediction 1271 1290 - -
Gma13g00542 1290 Pfam Myb-like DNA-binding domain 875 915 IPR001005 -
Gma13g00542 1290 MobiDBLite consensus disorder prediction 960 980 - -
Gma13g00542 1290 ProSiteProfiles SANT domain profile. 706 751 IPR017884 -
Gma13g00542 1290 CDD SANT 875 916 IPR001005 -
Gma13g00542 1290 ProSiteProfiles SANT domain profile. 871 922 IPR017884 -
Gma13g00542 1290 SMART sant 707 755 IPR001005 -
Gma13g00542 1290 SMART sant 872 920 IPR001005 -
Gma13g00542 1290 Gene3D - 687 757 - -
Gma13g00542 1290 MobiDBLite consensus disorder prediction 1263 1290 - -
Gma13g00542 1290 MobiDBLite consensus disorder prediction 192 214 - -
Gma13g00542 1290 MobiDBLite consensus disorder prediction 119 150 - -
Gma13g00542 1290 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1289 - -
Gma13g00542 1290 Coils Coil 139 159 - -
Gma13g00542 1290 Gene3D - 846 932 - -
Gma13g00542 1290 SUPERFAMILY Homeodomain-like 875 922 IPR009057 -
Gma13g00542 1290 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 1289 - -
Gma13g00542 1290 MobiDBLite consensus disorder prediction 119 158 - -
Gma13g00542 1290 SUPERFAMILY Homeodomain-like 696 754 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00542 Gma-Chr13 17936489 17946856 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g00542 Myb_DNA-binding 5.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00542 - - gsj:114382129 1235.71