Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00539 ATGGCATGGGTTAAGCATCAAATCCAGCAAAAAGATGGTTACTTGAGCTACTCACCACCCCTTTTGtcttcttcttcttcttcttcttcttcttcttcACCCCCTTACCCTCTTGGTGCTACTTTCCACAAGGAATCATCATTGCCTTCTTCAACACCACCACCACCACCATCTGGCACCAGAATTAGTCCTGCTGTTCTTTTCATCATAGTGGTTCTTGCTGTTTTGTTTTTCATCTCTGGCCTCCTCCACCTGCTTATTAGATTTCTCATAAAACACCCTTCTTCTGCATCTGCTCAATCCAACAGACACCAAGAACTTTCCACATCTGATGCACTCCAGAGGCAGCTTCAGCAGCTCTTCCACCTCCATGACTCTGGCTTGGATCAGGCTTTCATTGATGCTCTTCCTGTTTTCCAGTACAAGGAGATTGTGGGGTTGAAGGAGCCCTTTGACTGTGCTGTCTGCTTGTGTGAGTTTTCTGAGAAGGATAAGCTCAGGTTGTTGCCTATGTGCAGCCATGCCTTTCACATCAGTTGTATAGACACATGGCTTTTGTCAAACTCCACATGCCCTCTTTGTAGAGGAACACTTCTCACTCAAGGGTTTTCCATTGAGAACCCTATATTTGACTTTGATGATCTGAGGGAGGATGAAGGGTGCCCTTGTAATGGGGAGAATGGATTCAATACTAGGCAGAAAACAGTTGTGGTTGAAGAAAGTGTGGAGAAAGAGAAAGGTGTTTTCCCTGTGAGGCTTGGGAAATTCAAGAAGCTGAGTGTGAAGGGGGGTGGGGAGAGTGAAGTGGGAGAGACAAGTAGTAGTAATTTGGATGCAAGAAGGTGTTACTCAATGGGGTCTTACCAATATGTGGTTGGGAATTCAGACCTAAGGGTGACTTTGAACCATGATGAAATTGGTAAAGGTCAAGTCACAAGGCTCACCAAAGGAATGGAACTTGATGATGGGAAGGTTTCAGTGGAGGAGGGGGATGTGGAAGCAAAGAAGATTAGTAGTGCCAATGCCTTCTTATCTAAACACAGATTTTCCAAGGATGAGGGAACCAGAAGGGGCATGAAAGGAATTGAGTTAAGCTGTGATGGTGGGGTACCATTTGTTGGTTCGCTCCAAGATTCTGCGGTCAGAGTACAACTGTGCATGCTGTCGTTGGATGTTGTCAACGAGCCACGGTGA 1194 0.4472 MAWVKHQIQQKDGYLSYSPPLLSSSSSSSSSSSPPYPLGATFHKESSLPSSTPPPPPSGTRISPAVLFIIVVLAVLFFISGLLHLLIRFLIKHPSSASAQSNRHQELSTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTQGFSIENPIFDFDDLREDEGCPCNGENGFNTRQKTVVVEESVEKEKGVFPVRLGKFKKLSVKGGGESEVGETSSSNLDARRCYSMGSYQYVVGNSDLRVTLNHDEIGKGQVTRLTKGMELDDGKVSVEEGDVEAKKISSANAFLSKHRFSKDEGTRRGMKGIELSCDGGVPFVGSLQDSAVRVQLCMLSLDVVNEPR 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00539 397 Pfam Ring finger domain 152 195 IPR001841 -
Gma13g00539 397 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Gma13g00539 397 CDD RING-H2_PA-TM-RING 152 195 - -
Gma13g00539 397 SMART ring_2 153 194 IPR001841 -
Gma13g00539 397 MobiDBLite consensus disorder prediction 15 57 - -
Gma13g00539 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 201 IPR013083 -
Gma13g00539 397 PANTHER RING-H2 FINGER PROTEIN ATL47-RELATED 2 341 - -
Gma13g00539 397 MobiDBLite consensus disorder prediction 15 37 - -
Gma13g00539 397 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 341 - -
Gma13g00539 397 SUPERFAMILY RING/U-box 132 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00539 Gma-Chr13 17898777 17903670 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00539 59 292 C3H Transcription Factor Family AT2G18650 45.455 1.31e-54 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00539 - - gmx:100806337 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00539 13 17898777 17903670 Gma19g00102 19 1072599 1074433 GST