Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00509 ATGAAGAGGGCAAGGGATGATATGTATCCTGCCTCTCAATTCAAACGCCCCTTTGCTTCATCACGTGCTGATTCCTATGGACAAAACCAAGTCCCTGGAAGCGGAGGGGGAGGAGGAGGTGGCAATGGAGGTGTTGTTGGCGGGGGAGCAAATACTTCCCAAAAGCTTACTACCAATGATGCTTTATCCTATTTGAAGGAAGTTAAAGACATGTTTCAGGACCAAAGAGAGAAGTACGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCCCAACGGACTGACACTGCCGGTGTCATAAAAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTTGGATTTAATACATTCCTGCCAAAAGGTTATGAGATAACGCTTGATGAGGATGAGGCTCCTCCAAAGAAAACTGTTGAATTTGAAGAAGCAATCAGCTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCTTGTTTACAAATCATTCTTGGACATTTTAAATATGTACCGCAAAGAGCATAAGGACATTGGTGAGGTTTATAGTGAGGTTGCTACCCTTTTTAAGGACCATCGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATACTTCTGCTGCACCTTCCACACAGCATGCTCCATATATTCGAAATTCATTGCATCGCTTCAATGAGCGGGGTTCTATGGCCCCTATGATCCGCCAAATGCCAGCTGACAAGGCACAACGTTATCGACGAGACAGGCTTCCTTCTCACGATCGTGATCATGATATGAGTGCTGAACGCCCTGAGCTGGATGATGACAAGACAATGATGAACATACACAAGGAGCAGAGGAAGCGTGAAAGTAGGGAGAGGAGAATGCGTGATCAAGATGAGAGAGAACATGATCTTGATAACAACAGGGATTTGAACTTGCAACGCTTTCCTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCTGATGATTACCAAACGTTCTTGAAGTGCCTTCATATTTTCAGCAATGGAATAATTAAAAGGAATGATTTGCAAAATTTGGTAACTGATTTACTCGGAAAGCATTCGGATCTTATGGATGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCGCTGTCTACTGATGCTCATTTATCAAGATCATCAAAATTGGAGGACAAGGACAAAGAGCACAAGCGCGATATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATACATGGGAAAATCAATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGCACTCCCAGCTACCGACTTCTGCCTGCAGATTATCCAATTCCTACAGCTAGTCAGAGATCCGAGCTTGGTGCTCAAGTCTTGAATGACCATTGGGTATCTGTGACTTCTGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGAAATCAGTATGAAGAGAGCTTGTTCAGATGTGAAGATGACAGATATGAGCTGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAAAAAGCAGAGGAATTGTATAATAACATCAATGAAAATAAAATTGGCATGGAGACTCTGAACCGTATTGAAGATCACTTTACTGTTCTGAATTTAAGGTGCATTGAACGTTTATACGGTGATCATGGTCTGGATGTTATAGACATATTGCGTAAAAACCCAACCCATGCCCTGCCTGTAATATTGACTCGACTGAAGCAGAAGCAAGAGGAGTGGAGTAAGTGTCGTTCAGATTTCAATAAAGTATGGGCTGAAATTTATGCTAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTACTTCAAACAGCAAGATTCAAAGAACTTGAGCACCAAATCTTTGGTTACTGAGATTAAAGAAATTAAAGAAAAGCAGCAGAAAGAGGATGATATTATTCAGTCTATTGCAGCTGGAAATAAACAGCCTCTAATTCCACATCTGGAATTTGAATATTCTGATGTTGGGATTCATGAAGACCTGTATAAACTTGTTTGTTATTCATGTGAGGAGTTATTCTCAAGTAAGGAGTTGTTAAATAAAATTATGAGGCTCTGGAGTACCTTCTTGGAGCCAATGCTTGGTGTTCCTTCCCAATCTCATGGAACAGAAAGGGCCGAGGACAGAAAAACTGGGCATAATGTTCGCAATTTTGGTGCACCAAATATCGGGGGTGATGGAAGTCCCCGTGGAGACTCTCTTTTAATGAATTCAAGGGTACCAAAATCTGATAAGAATGAAGCTGATGGTAGAGTAACTGAAGTGAAGAATGTTCACCGGACTACTGTGGCATCCAATGATAAAGAAAATGGGTCTGTTGGTGGCGAACTTGTTAGTAGAGATGATCCTTTAATGGATAAAGGACAGAAAAATGTAGAATACAATGATAAAGCTTCTGGATTTAGCAAACAATTTACCTCTGATGAGCAAGGAGCTAAAAACAATGTATCAATTGCAATTAGAGGAGAAAACAGCCTGAACAGAACTAACTTAGATGTGTCTCCAGGCCGTGCCCTTACTCCATCGCGACCTACTGATGTTGATGACTCTGTATCCAAGTCTCAGGGTGTTAATGCACCATCGGTGGAGGGATGTGACATGGCAACTCCAGTACCAGTGGCCAATGGTGTTCTAAGTGAGAGCAGTAAAGTTAAAACTCACGATGAATCAGTTGGGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTGTCACCAAATGGTGACTCTGAGGAGGATAACATTGTTGCTTATGGAGATTCAAATGTGCAATCAATGGCCAAGTCAAAGCACAACATTGAAAGAAGGAAATATCAGTCTAGAAATGGAGAGGATGAATCTTGTCCTGAGGCTGGAGGTGACAATGATGCAGATGCAGATGATGAGGACAGTGAAAATGTTTCTGAAGCTGGTGAAGATGTCTCAGGCAGTGAATCTGCTGGTGATGAATGCTTCCGTGAAGATCATGAAGAGGAGGAGGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATATGTGATGCACAAGCAGGAGGAGATGGCACATCTTTGCCATTGTCAGAGAGGTTCCTTTCATCTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTTGTCGAAGAAATGAAGGACTCAAGGGTGTTCTATGGAAATGATGACTTCTATGTGTTTTTTAGACTTCATCAAGCTCTTTATGAGAGGCTCTTATCAGCAAAAACACATTCAATGAGCGCAGAAATGAAATGGAAAGCAAAAGATGCTAGTTCACCAGATCCTTATTCAAGATTTATCAATGCATTGTACAACTTGCTTGATGGATCTGCCGAAAATGCAAAGTTTGAAGATGAATGCCGGGCAATTATTGGGAACCAGTCATATGTGTTATTCACATTGGACAAGTTAATATACAAATTGGTCAGACAGCTTCAAACTGTCGCAACCGATGAGGTAGACAATAAGCTTCTCCAATTATATGAATATGAAAAGTCTCGCAAGCCTGGGAAGTTAAATGATTCTGTATATCATGCAAATGCTCATGTCATCCTTCATGAGGAGAATATATATCGTTTACAATGTTCCTCTACCCCCTCACGACTATCCATCCAGCTCATGGACAATATGAATGAAAAGCCTGAGTTGTTTGCCGTTTCCATTGATCCAAATTTCTCTTTTTATCTGCACAATGATTTTCTGTCTGTCTTTCCCAACAAAAAGGAGCCCCATGGCATCATACTGCATAGAAACAAACGCCAATATGGAAAATTAGATGAGCTTTCTGCAATATGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAGCTCATCTAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGACCAAGAAAGAAAAGACGAACGCCTTCAGGGACCACAACCTCTCGGTTCCGCAGGGACAGAGAGGAAAGATTCCGCAAATTGTTGGCATGCTCGTAA 4119 0.4098 MKRARDDMYPASQFKRPFASSRADSYGQNQVPGSGGGGGGGNGGVVGGGANTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIKRVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDELVYKSFLDILNMYRKEHKDIGEVYSEVATLFKDHRDLLEEFTRFLPDTSAAPSTQHAPYIRNSLHRFNERGSMAPMIRQMPADKAQRYRRDRLPSHDRDHDMSAERPELDDDKTMMNIHKEQRKRESRERRMRDQDEREHDLDNNRDLNLQRFPDKKKSVKKAEGMYSQAFSFCEKVKEKLSSSDDYQTFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSLSTDAHLSRSSKLEDKDKEHKRDMDGAKEKERYREKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRYELDMLLESVSSAAKKAEELYNNINENKIGMETLNRIEDHFTVLNLRCIERLYGDHGLDVIDILRKNPTHALPVILTRLKQKQEEWSKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIIQSIAAGNKQPLIPHLEFEYSDVGIHEDLYKLVCYSCEELFSSKELLNKIMRLWSTFLEPMLGVPSQSHGTERAEDRKTGHNVRNFGAPNIGGDGSPRGDSLLMNSRVPKSDKNEADGRVTEVKNVHRTTVASNDKENGSVGGELVSRDDPLMDKGQKNVEYNDKASGFSKQFTSDEQGAKNNVSIAIRGENSLNRTNLDVSPGRALTPSRPTDVDDSVSKSQGVNAPSVEGCDMATPVPVANGVLSESSKVKTHDESVGPCKIEKEEGELSPNGDSEEDNIVAYGDSNVQSMAKSKHNIERRKYQSRNGEDESCPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGICDAQAGGDGTSLPLSERFLSSVKPLTKHVSAVSFVEEMKDSRVFYGNDDFYVFFRLHQALYERLLSAKTHSMSAEMKWKAKDASSPDPYSRFINALYNLLDGSAENAKFEDECRAIIGNQSYVLFTLDKLIYKLVRQLQTVATDEVDNKLLQLYEYEKSRKPGKLNDSVYHANAHVILHEENIYRLQCSSTPSRLSIQLMDNMNEKPELFAVSIDPNFSFYLHNDFLSVFPNKKEPHGIILHRNKRQYGKLDELSAICSAMEGVKVINGLECKIACSSSKISYVLDTQDFFFRPRKKRRTPSGTTTSRFRRDREERFRKLLACS 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00509 1372 SUPERFAMILY PAH2 domain 52 123 IPR036600 GO:0006355
Gma13g00509 1372 MobiDBLite consensus disorder prediction 881 895 - -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 1 52 - -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 984 1004 - -
Gma13g00509 1372 ProSiteProfiles PAH domain profile. 316 392 IPR003822 GO:0006355
Gma13g00509 1372 SMART hdac_interact2seq4b 456 556 IPR013194 -
Gma13g00509 1372 Pfam C-terminal domain of Sin3a protein 1092 1339 IPR031693 -
Gma13g00509 1372 Coils Coil 529 549 - -
Gma13g00509 1372 Gene3D Paired amphipathic helix 322 394 IPR036600 GO:0006355
Gma13g00509 1372 MobiDBLite consensus disorder prediction 863 1044 - -
Gma13g00509 1372 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1357 - -
Gma13g00509 1372 Coils Coil 417 437 - -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 415 435 - -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 964 983 - -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 241 312 - -
Gma13g00509 1372 ProSiteProfiles PAH domain profile. 138 208 IPR003822 GO:0006355
Gma13g00509 1372 MobiDBLite consensus disorder prediction 18 32 - -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 243 312 - -
Gma13g00509 1372 SUPERFAMILY PAH2 domain 135 207 IPR036600 GO:0006355
Gma13g00509 1372 MobiDBLite consensus disorder prediction 918 939 - -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 1020 1035 - -
Gma13g00509 1372 PANTHER SIN3B-RELATED 1 1357 IPR039774 GO:0003714
Gma13g00509 1372 Gene3D Paired amphipathic helix 137 209 IPR036600 GO:0006355
Gma13g00509 1372 Pfam Paired amphipathic helix repeat 162 205 IPR003822 GO:0006355
Gma13g00509 1372 Pfam Paired amphipathic helix repeat 345 389 IPR003822 GO:0006355
Gma13g00509 1372 Pfam Paired amphipathic helix repeat 77 121 IPR003822 GO:0006355
Gma13g00509 1372 ProSiteProfiles PAH domain profile. 54 124 IPR003822 GO:0006355
Gma13g00509 1372 Gene3D Paired amphipathic helix 60 122 IPR036600 GO:0006355
Gma13g00509 1372 Pfam Sin3 family co-repressor 458 550 IPR013194 -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 733 786 - -
Gma13g00509 1372 MobiDBLite consensus disorder prediction 800 823 - -
Gma13g00509 1372 SUPERFAMILY PAH2 domain 327 392 IPR036600 GO:0006355
Gma13g00509 1372 MobiDBLite consensus disorder prediction 413 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00509 Gma-Chr13 17530423 17540549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00509 38 157 WRKY Transcription Factor Family AT4G12020 48.760 2.16e-22 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma13g00509 Sin3a_C 7.5e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00509 K11644 - gmx:100812405 2628.97
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00509 13 17530423 17540549 Gma19g00141 19 1586921 1596605 GST