Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00507 ATGGACCAAGTGGTGAAGTATGACATGTTTTGTGAAATCTTGATAGATTTCAAGGCTAAAAGGGTTAACATTTATGATGTCATAAAAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTGGGATTTCAAACTTTTCTGCCAAAGGGTTATAAGATAACATTTGACAAGGATGAGGCTCCTTCGAACTTTGGACAAAACCAAGTCCCTGGAAGTGGCAATGGTGGTGATGTTTGTGGGGGAGCAACTACTTCCAAAGAAGTGACTGCCGCTGATGCCTTATCCTATTTGTGGGAAGTCAAAGCAGCATTTCAGGACCAAAGGGAGAAGTATAACATGTTCATTGAGATCATGAAAGATTTCGAGGCTCGAAGGATTCGCACTAATGCTGTCATAACAAGGGTGAAGGAGTTATTCAAAGGGCACAACAATTTGATTTTGGGATTTCAAACTTTTCTACCAGAAGGTTCTCCCTCCAAGCCATGGACTCCAGCCATGTCGCCCTTGTTGCGTTCCTCCTTTGATCCAAGGACTTCAAGCACTACCGCTGCGACTACAACATCATCACCATCAAGGCCGATGATGGTAGCAACACTCTCACTTTCATGTTTGAAATCACTAGATCACATTTTCATTTTGTTCTTCAACATTCAAAATCCTAAATCCATTTCTCTTCACCGTTCTCTCACCTTGCACACAATGCCAATCATCGACGCCAAGCACACATTGTGTTCTCACCTTTCCTTACCCTTCGCAAATCTCCCTGCCAATGCACTGCCATAA 789 0.4246 MDQVVKYDMFCEILIDFKAKRVNIYDVIKRVKELFKGHNNLILGFQTFLPKGYKITFDKDEAPSNFGQNQVPGSGNGGDVCGGATTSKEVTAADALSYLWEVKAAFQDQREKYNMFIEIMKDFEARRIRTNAVITRVKELFKGHNNLILGFQTFLPEGSPSKPWTPAMSPLLRSSFDPRTSSTTAATTTSSPSRPMMVATLSLSCLKSLDHIFILFFNIQNPKSISLHRSLTLHTMPIIDAKHTLCSHLSLPFANLPANALP 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00507 262 SUPERFAMILY PAH2 domain 2 51 IPR036600 GO:0006355
Gma13g00507 262 ProSiteProfiles PAH domain profile. 88 158 IPR003822 GO:0006355
Gma13g00507 262 SUPERFAMILY PAH2 domain 86 157 IPR036600 GO:0006355
Gma13g00507 262 Gene3D Paired amphipathic helix 94 156 IPR036600 GO:0006355
Gma13g00507 262 Gene3D Paired amphipathic helix 1 50 IPR036600 GO:0006355
Gma13g00507 262 Pfam Paired amphipathic helix repeat 111 155 IPR003822 GO:0006355
Gma13g00507 262 Pfam Paired amphipathic helix repeat 6 49 IPR003822 GO:0006355
Gma13g00507 262 ProSiteProfiles PAH domain profile. 1 52 IPR003822 GO:0006355
Gma13g00507 262 PANTHER SIN3B-RELATED 2 61 IPR039774 GO:0003714
Gma13g00507 262 PANTHER SIN3B-RELATED 79 158 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00507 Gma-Chr13 17512210 17514713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00507 6 66 WRKY Transcription Factor Family AT4G12020 50.000 8.80e-12 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Gma13g00507 PAH 2.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00507 K11644 - gmx:102664951 323.168