Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00488 ATGGCTGAGAAGGAAGAAGCCATGCATGCTGTTTTGAAGGAAGCTGTGGATTTGGAAAACAAAGAGATAAATGAGAAAGGAATATATATTTATCAAAATCTGACACAGGAGAGCAAGGTTTTGAAGTTTTTAGGATTTATGTGGAATCCTCTTTCATGGGTCATGGAAGCTGCAGCAATCATGGCCATTGCTTTGGCCAATGGAGGAGGAAAACCTCCTGATTGGCAAGACTTTGTTGGGATTATCACACTCCTTATTATCAATTCAACAATAAGTTTCATTGAGGAGAACAATGCTGGTAATGCTGCGGCAGCTCTGATGGCTCGTTTAGCACCTAAAGCTAAGTTCCTTCGAGATGGGAAATGGATTGAGGAGGATGCTAGCATTCTTGTTCCTGGTGATATAATTAGTGTTAAGCTAGGGGATATTATCCCTGCGGATGCTCGTCTACTTGAAGGTGATCCACTGAAGATTGATCAGTCTGCACTTACAGGCGAGTCTCTTCCTGTCACAAAAGGCCCTGGTGATAGTGTTTATTCAGGCTCCACATGCAAGCAGGGAGAGATCAATGCAGTTGTTATTGCCACAGGAGTTCATACCTTCTTTGGCAAAGCTGCTCATCTTGTGGACTCCACAAATCAAGTTGGTCATTTCCAGAAGGTCCTGACTGCAATTGGGAACTTCTGCATATGTTCCATTGCTGTGGGAATGATAGTAGAGATAATTGTCATGTACCCAATTCAACACCGGGAATATCGTCCTGGGATTGACAATCTGCTTGTGCTTCTTATTGGAGGAATTCCTATTGCCATGCCTACTGTTTTGTCAGTGACAATGGCAATTGGATCCCATCGCTTAGCTCAGCAGGGTGCTATTACTAAAAGAATGACAGCAATAGAAGAGATGGCAGGAATGGATGTATTATGTAGTGACAAAACTGGAACTTTGACTTTGAATAAACTGACAGTTGACAAGAATCTTATTGAGATTTTTGCTAAAGGAGTTGACGTAGATACTGTTGTTCTCATGGCCGCTCGGGCTGCACGATTGGAAAACCAAGATGCTATAGATGCCGCTATTGTAGGGATGTTGGGTGATCCAAAAGAGGCAAGGGCTGGTATTCAAGAGGTTCACTTCCTACCCTTCAATCCAACTGACAAGCGAACTGCAATCACTTATATAGACGGTGAAAGTAAAATGCATCGTGTCAGCAAAGGAGCACCAGAGCAGATTTTGAATCTTGCACGCAATAAATCAGAGATAGAACGCAGAGTTCATTCTGTCATTGATAAGTTTGCAGAGCGAGGATTACGGTCTCTTGCAGTAGCTTACCAGGAAGTTCCTGATGGAAAGAAAGAAAGCCAAGGTGGGCCTTGGCAATTTATTGGACTCTTGCCTCTATTTGACCCACCTAGACATGATAGCGCTGAGACAATACGAAGGGCATTAAATCTTGGAGTAAATGTTAAAATGATAACAGGTGATCAACTAGCAATAGGAAAAGAAACAGGACGCCGTCTGGGGATGGGAACCAACATGTACCCTTCATCGGCTTTATTGGGCCAAAACAAGGATGAAGCAATTGCTACCTTGCCAGTTGATGAGTTGATTGAAAAAGCAGATGGATTTGCTGGTGTTTTTCCTGAACACAAATATGAGATCGTGAAACGTTTACAAGCTAGGAAACACATATGTGGAATGACTGGTGATGGGGTTAACGATGCTCCTGCTCTTAAAAAGGCAGATATTGGAATAGCTGTCGCCGATGCTACTGATGCAGCTCGTAGTGCTTCTGATATTGTTCTGACTGAACCTGGTCTCAGTGTTATCATCAGTGCTGTACTGACCAGTCGAGCAATATTCCAAAGGATGAAGAATTACACAATCTATGCAGTTTCCATCACAATCCGTATTGTGCTTGGTTTCATGTTACTGGCCCTCATATGGCATTTTGATTTTCCACCATTCATGGTGCTGATTATTGCTATTCTTAATGACGGTACCATTATGACGATATCAAAGGACAGGGTGAAACCATCTCCATATCCAGATAGCTGGAAGTTGGCCGAGATCTTTACCACTGGAATAATTCTTGGTGGTTATTTGGCTATGATGACAGTTATTTTCTTTTGGGCAGCATATAAAACAGATTTTTTCCCTCAAACATTTGGAGTCTCAAGTCTTCAGAAAAAGGATAGGGATGACTTTAGAAAGCTTGCCTCAGCAATATACCTACAAGTTAGCACAATTAGTCAGGCCCTCATATTCATTACACGGGCTCGGAGTTGGTCTTATGTTGAACGTCCGGGTTTGTTACTTGTTGCAGCTTTTGTTATCGCCCAGCTGATAGCTACCTTAATTGCAGTTTATGCAAATTGGAGTTTCGCTGCTATTGAAGGGATTGGATGGGGTTGGGCTGGTGTTGTTTGGCTTTACAACCTCATCTTTTATATCCCACTTGACTTTATCAAGTTCATAATTCGATATGCCTTGAGTGGAAGGGCTTGGGATCTTGTTATTGAACAAAGGATTGCTTTTACAAGGAAAAAAGATTTTGGAAAGGAAGAACGTGAACTTAAATGGGCACATGCACAGAGGACGCTTCACGGCCTTCACCCACCAGAGACTAAGATGTTCAATGAACGTACAAGTTACACAGAACTTAATCAGATGGCTGAAGAGGCTAGAAGACGAGCAGAAATTGCAAGGCTGAGAGAACTGCATACACTTAAGGGTCGTGTTGAGTCTGTGGTTAGACTGAAGGGTCTTAACATTGACACAATACAGCAAGCATACACTGTCTAG 2805 0.4246 MAEKEEAMHAVLKEAVDLENKEINEKGIYIYQNLTQESKVLKFLGFMWNPLSWVMEAAAIMAIALANGGGKPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMARLAPKAKFLRDGKWIEEDASILVPGDIISVKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKGPGDSVYSGSTCKQGEINAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIVEIIVMYPIQHREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLAQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEIFAKGVDVDTVVLMAARAARLENQDAIDAAIVGMLGDPKEARAGIQEVHFLPFNPTDKRTAITYIDGESKMHRVSKGAPEQILNLARNKSEIERRVHSVIDKFAERGLRSLAVAYQEVPDGKKESQGGPWQFIGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGQNKDEAIATLPVDELIEKADGFAGVFPEHKYEIVKRLQARKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVLGFMLLALIWHFDFPPFMVLIIAILNDGTIMTISKDRVKPSPYPDSWKLAEIFTTGIILGGYLAMMTVIFFWAAYKTDFFPQTFGVSSLQKKDRDDFRKLASAIYLQVSTISQALIFITRARSWSYVERPGLLLVAAFVIAQLIATLIAVYANWSFAAIEGIGWGWAGVVWLYNLIFYIPLDFIKFIIRYALSGRAWDLVIEQRIAFTRKKDFGKEERELKWAHAQRTLHGLHPPETKMFNERTSYTELNQMAEEARRRAEIARLRELHTLKGRVESVVRLKGLNIDTIQQAYTV 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00488 934 SUPERFAMILY Calcium ATPase, transduction domain A 112 209 IPR008250 -
Gma13g00488 934 SUPERFAMILY Calcium ATPase, transmembrane domain M 37 831 IPR023298 -
Gma13g00488 934 Coils Coil 1 21 - -
Gma13g00488 934 Pfam E1-E2 ATPase 110 289 - -
Gma13g00488 934 Gene3D - 112 196 - -
Gma13g00488 934 ProSitePatterns E1-E2 ATPases phosphorylation site. 311 317 IPR018303 -
Gma13g00488 934 SUPERFAMILY HAD-like 305 615 IPR036412 -
Gma13g00488 934 Gene3D - 306 605 IPR023214 -
Gma13g00488 934 SFLD p-type atpase 291 619 IPR044492 -
Gma13g00488 934 PRINTS P-type cation-transporting ATPase superfamily signature 591 603 - -
Gma13g00488 934 PRINTS P-type cation-transporting ATPase superfamily signature 568 587 - -
Gma13g00488 934 PRINTS P-type cation-transporting ATPase superfamily signature 309 323 - -
Gma13g00488 934 PRINTS P-type cation-transporting ATPase superfamily signature 159 173 - -
Gma13g00488 934 PRINTS P-type cation-transporting ATPase superfamily signature 485 495 - -
Gma13g00488 934 PRINTS P-type cation-transporting ATPase superfamily signature 463 474 - -
Gma13g00488 934 Gene3D - 883 934 - -
Gma13g00488 934 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 81 329 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00488 934 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 543 657 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00488 934 PRINTS H+-transporting ATPase (proton pump) signature 425 443 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00488 934 PRINTS H+-transporting ATPase (proton pump) signature 744 765 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00488 934 PRINTS H+-transporting ATPase (proton pump) signature 599 624 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00488 934 PRINTS H+-transporting ATPase (proton pump) signature 540 556 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00488 934 PRINTS H+-transporting ATPase (proton pump) signature 568 584 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Gma13g00488 934 Pfam haloacid dehalogenase-like hydrolase 305 582 - -
Gma13g00488 934 PANTHER PLASMA MEMBRANE ATPASE 5 914 - -
Gma13g00488 934 SFLD C1.7: P-type atpase like 291 619 - -
Gma13g00488 934 PANTHER CALCIUM-TRANSPORTING ATPASE 5 914 - -
Gma13g00488 934 Gene3D - 321 468 IPR023299 GO:0000166
Gma13g00488 934 Coils Coil 885 905 - -
Gma13g00488 934 CDD P-type_ATPase_H 36 825 IPR006534 GO:0008553|GO:0016021|GO:0120029
Gma13g00488 934 Gene3D - 74 799 - -
Gma13g00488 934 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 36 790 IPR006534 GO:0008553|GO:0016021|GO:0120029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00488 Gma-Chr13 17229972 17238030 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00488 1 934 Primary Pumps ATPases AT5G62670 86.088 0.0 1659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00488 K01535 - gmx:100818268 1706.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00488 13 17229972 17238030 Gma19g00165 19 2037780 2046054 GST