Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00482 ATGTGGACCGTTCGATTTCGATATGGCCGTAAAGATTACAAGGGATTTCGTGACCAGGCTGTTGTAAGTTTGACCAATTTTTTCCAAAACACCTGTGGGATATCGGTAGAAGAGAAGCAGCTTTCTGTTAGTGGACGTAATTGGGGAGAAGTTGATCTAAATGGAAATATGCTGGCTTTCATGGTTGGTTCAAAGCAAGCTTTTGAAGTGTCTCTAGCTGATGTCTCTCAAACACAGCTTCAAGGGAAGAATGATGTCATCTTGGAGTTTCATGTGGATGACACAACTGGAGCTAATGAGAAAGATTCACTGATGGAGATAAGTTTTCATATACCAAATTCCAACACCCAGTTTGTTGGTGATGAAAATCGTCCCCCTGCTCAGGTTTTCCGCGACAAAATTATGTCTATGGCTGATGTTGGCGCTGGAGGTGAAGATGCTGTTGTTACATTTGAGGGACAGGCTAATGATTTCAAAATCCAGTATAGCAGTGTGGTTCGCCTATTTTTACTTCCTAAGTCTAATCAACCACATACCTTTGTCATTATTAGTCTTGATCCCCCTATTCGGAAGGGACAAACTTTGTACCCTCATATTGTTATGCAGTTCGAAACCGATTATGTTGTTCAAAGTGAATTGGCGATGAATGAAGATCTTTATAACACAAAGTACAAGGACAAGTTGGAGCTGTCTTATAAGGGGCTTATTCATGAAGTATTCACCACAATATTACATGGCTTGTCTGGTGCCAAAGTGACTAAGCCTGGAAAATTTAGAAGTTGTCAAGATGGTTATGCAGTGAAATCATCTTTGAAAGCTGAAGATGGAATTCTGTATCCCCTTGAGAAGAGCTTCTTCTTTCTTCCTAAACCTCCCACTCTTAGTCTTCATGAAGAGATTGACTATGTGGAATTTGAGCGGCATGCTGGTGGTGGTTCCAATATGCATTATTTTGACCTTCTCATCAGACTAAAATCTGAACAAGAACATCTCTTCCGTAATATTCAGAGAAATGAGTACCACAATTTGTATGAATTTATCAGTTCAAAGGGCTTGAAAATTATGAACTTAGGAGATGCCCAACCTACTGTTGGTATAAAGAAGGTTCTTGAGAATGATGATGATGATGCTGTTGATCCACATCTTGAGCGCATAAAGAATGAAGCTGGTGGAGATGAAAGTGATGAGGAGgatTCCGACTTTGTTGCTGACAAGGATGATGAAGGTTCTCCTACCGATGACTCTGGGGCAGATGATTCTGATGGCAGTGATAGTGGTGATGAGAAAGAGAAGCCTGCCAAAAAGGAATCAAAGAAGGATCTGCCTTCTAAGGCATCTACTTCTAAAAAGAAATCAAAAGATGATGAAGATGGAAAGAAGAAAAAACAGAAGAAGAAAAAAGACCCAAATGCACCCAAGAGGGCAATGTCTGGTTTCATGTTCTTTTCTAAATTGGAAAGAGAGAATCTAAAGAAGACTAATCCTGGAATTTCATTTACGGATGCGGGAAGAGTACTTGGAGAGAAATGGAAAAAGTTGTCAGCGGAAGAGAAGGAACCATATGAGGCAAAAGCACGTGAAGATAAAAAGCGTTACAAGGATGAGATTAGCGGCTAG 1617 0.402 MWTVRFRYGRKDYKGFRDQAVVSLTNFFQNTCGISVEEKQLSVSGRNWGEVDLNGNMLAFMVGSKQAFEVSLADVSQTQLQGKNDVILEFHVDDTTGANEKDSLMEISFHIPNSNTQFVGDENRPPAQVFRDKIMSMADVGAGGEDAVVTFEGQANDFKIQYSSVVRLFLLPKSNQPHTFVIISLDPPIRKGQTLYPHIVMQFETDYVVQSELAMNEDLYNTKYKDKLELSYKGLIHEVFTTILHGLSGAKVTKPGKFRSCQDGYAVKSSLKAEDGILYPLEKSFFFLPKPPTLSLHEEIDYVEFERHAGGGSNMHYFDLLIRLKSEQEHLFRNIQRNEYHNLYEFISSKGLKIMNLGDAQPTVGIKKVLENDDDDAVDPHLERIKNEAGGDESDEEDSDFVADKDDEGSPTDDSGADDSDGSDSGDEKEKPAKKESKKDLPSKASTSKKKSKDDEDGKKKKQKKKKDPNAPKRAMSGFMFFSKLERENLKKTNPGISFTDAGRVLGEKWKKLSAEEKEPYEAKAREDKKRYKDEISG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00482 538 MobiDBLite consensus disorder prediction 513 538 - -
Gma13g00482 538 CDD PH2_SSRP1-like 258 357 - -
Gma13g00482 538 MobiDBLite consensus disorder prediction 384 480 - -
Gma13g00482 538 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 12 155 - -
Gma13g00482 538 PANTHER FACT COMPLEX SUBUNIT SSRP1-B 152 536 - -
Gma13g00482 538 Coils Coil 522 538 - -
Gma13g00482 538 CDD PH1_SSRP1-like 153 256 - -
Gma13g00482 538 CDD HMGB-UBF_HMG-box 472 537 - -
Gma13g00482 538 SUPERFAMILY PH domain-like 149 356 - -
Gma13g00482 538 SMART Rtt106_2 264 357 IPR013719 -
Gma13g00482 538 Pfam Structure-specific recognition protein (SSRP1) 45 113 IPR024954 -
Gma13g00482 538 Gene3D - 146 254 - -
Gma13g00482 538 MobiDBLite consensus disorder prediction 422 463 - -
Gma13g00482 538 SMART hmgende2 471 538 IPR009071 -
Gma13g00482 538 Pfam Histone chaperone Rttp106-like 266 355 IPR013719 -
Gma13g00482 538 PRINTS Structure-specific recognition protein signature 290 307 IPR000969 GO:0003677|GO:0005634
Gma13g00482 538 PRINTS Structure-specific recognition protein signature 245 258 IPR000969 GO:0003677|GO:0005634
Gma13g00482 538 PRINTS Structure-specific recognition protein signature 316 332 IPR000969 GO:0003677|GO:0005634
Gma13g00482 538 PRINTS Structure-specific recognition protein signature 272 290 IPR000969 GO:0003677|GO:0005634
Gma13g00482 538 PRINTS Structure-specific recognition protein signature 157 173 IPR000969 GO:0003677|GO:0005634
Gma13g00482 538 PRINTS Structure-specific recognition protein signature 180 196 IPR000969 GO:0003677|GO:0005634
Gma13g00482 538 PRINTS Structure-specific recognition protein signature 332 350 IPR000969 GO:0003677|GO:0005634
Gma13g00482 538 PANTHER FACT COMPLEX SUBUNIT SSRP1 12 155 - -
Gma13g00482 538 PANTHER FACT COMPLEX SUBUNIT SSRP1 152 536 - -
Gma13g00482 538 SUPERFAMILY HMG-box 459 536 IPR036910 -
Gma13g00482 538 Gene3D - 255 363 IPR011993 -
Gma13g00482 538 Gene3D - 34 118 IPR038167 -
Gma13g00482 538 Gene3D High mobility group box domain 447 538 IPR036910 -
Gma13g00482 538 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 472 538 IPR009071 -
Gma13g00482 538 Pfam HMG (high mobility group) box 472 536 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00482 Gma-Chr13 17191168 17197293 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00482 468 536 ARID Transcription Factor Family AT1G04880 43.478 5.61e-09 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Gma13g00482 Rtt106 3.4e-19 CL0266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00482 K09272 - gmx:100805034 929.858