Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00471 ATGGCTTTCCCTCCTTCTCACACTTTCATGTTCCAAACCCATGAAGATCATGACCCCCACCAGCTCCATCTGCGTTCAACTTCAACATCCCTCAACGCCTTCCCCTCTTTCCCACCTCATCACTTTCAAGGTGGTGGGGCAGGTGCAGGAGGTTTTATGATGAAGCGTTCAATGTCGTTTTCCAGCATAGAGAAGAACAACCACAAGAACAAGTGCGATGAGGTGCACGGTGACGACGAGTTATCGGACGAGGGATCTCAGCTCCTAGGGGAGAAGAAGAAGAGGCTGAGTCAGGAGCAGGTGAAGGGTCTCGAGAAGAGCTTCGAGCTCGGGAACAAGCTCGAGCCCGAGAGGAAAATGCAGCTGGCCAAGGCCCTGGGACTTCAGCCAAGGCAGATCTCCATATGGTTCCAGAACAGAAGAGCTAGGTGGAAGACCAAGCAGCTTGAGAAGGAGTATGAAGTTCTCAAGAAACTGTTTGAAGCTGTTAAGGCTGATAATGACTCCCTCAAGGCTCAGAACCAGAAACTACATGCAGAGTTACAAACTCTAAAAAGTAGGGACTGCAGTGAAACCGGAACAGTAATTAGCCTCAAGAAAGAAACTGAGGGTTCTTGGAGCAATGGCAGCAACAACAGTTCAGAAATCAATTTGGATCTCTCAAGAACACCAGTGATGAATAGTCCTGTGTCTTCTTCTCTGAATGGAAAAACCCTTTTACCAACTTCCCTTAAGCCCACAAGCATAACTCAACTCCTCCAATGCTCATCAAGATCAGATCTCCAAGATGAGAGCTTCTGCAACATGTTCCACAACATTGATGAGCAGCAGAATTTTTGGCCCTGGCCTGATCATCAGCAACACCAGTTTCATTAA 876 0.4772 MAFPPSHTFMFQTHEDHDPHQLHLRSTSTSLNAFPSFPPHHFQGGGAGAGGFMMKRSMSFSSIEKNNHKNKCDEVHGDDELSDEGSQLLGEKKKRLSQEQVKGLEKSFELGNKLEPERKMQLAKALGLQPRQISIWFQNRRARWKTKQLEKEYEVLKKLFEAVKADNDSLKAQNQKLHAELQTLKSRDCSETGTVISLKKETEGSWSNGSNNSSEINLDLSRTPVMNSPVSSSLNGKTLLPTSLKPTSITQLLQCSSRSDLQDESFCNMFHNIDEQQNFWPWPDHQQHQFH 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00471 291 Coils Coil 139 187 - -
Gma13g00471 291 CDD homeodomain 92 148 IPR001356 GO:0003677
Gma13g00471 291 ProSiteProfiles 'Homeobox' domain profile. 91 147 IPR001356 GO:0003677
Gma13g00471 291 ProSitePatterns 'Homeobox' domain signature. 122 145 IPR017970 GO:0000981|GO:0006355
Gma13g00471 291 Gene3D - 86 155 - -
Gma13g00471 291 SMART HOX_1 90 151 IPR001356 GO:0003677
Gma13g00471 291 Pfam Homeobox associated leucine zipper 147 186 IPR003106 GO:0006355|GO:0043565
Gma13g00471 291 PRINTS Lambda-repressor HTH signature 118 127 IPR000047 GO:0003677
Gma13g00471 291 PRINTS Lambda-repressor HTH signature 127 143 IPR000047 GO:0003677
Gma13g00471 291 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 1 291 IPR045224 GO:0003700
Gma13g00471 291 Pfam Homeodomain 92 145 IPR001356 GO:0003677
Gma13g00471 291 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 1 291 - -
Gma13g00471 291 SUPERFAMILY Homeodomain-like 91 149 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00471 Gma-Chr13 17091196 17094065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00471 1 284 Homeobox Transcription Factor Family AT5G15150 50.166 1.36e-80 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gma13g00471 Homeodomain 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00471 K09338 - gmx:100790803 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00471 13 17091196 17094065 Gma19g00186 19 2259995 2263829 GST
Gma13g00471 13 17091196 17094065 Gma18g02361 18 57688572 57691294 PCT
Gma13g00471 13 17091196 17094065 Gma09g02195 09 47463056 47465180 PCT
Gma18g02361 18 57688572 57691294 Gma13g00471 13 17091196 17094065 PCT
Gma09g02195 09 47463056 47465180 Gma13g00471 13 17091196 17094065 PCT