Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00463 ATGGGAAGGCCACCATGTTGTGATAAAGAAGGTGTAAAGAAAGGACCTTGGACTCCTGAAGAAGACATCATTTTGGTGTCTTATATTCAGGAACATGGTCCTAGCAATTGGAAAGCTGTTCCTGCCAATACTGGGTTGTCAAGGTGCAGTAAGAGTTGTAGACTTAGATGGACTAATTACCTGAGACCAGGAATCAAAAGGGGTAACTTCACAGACCAAGAGGAGAAGATGATAATCCATCTTCAAGCACTTTTAGGGAACAGATGGGCTGCAATAGCTGCTTACCTACCACAAAGAACAGATAATGACATAAAAAACTATTGGAACACCTATTTGAAAAAGAAGCTGAACAAATTGGAAGCAGGTTCTGATCAGGGACATAATATTGGGGTTTCAGTTTCTCAGCCAATGTCAAGAGGCCAGTGGGAAAGAAGGCTTCAAACAGATATCCGCATGGCTAAAAGAGCACTTATTGAAGCACTCTCATCAAACAAGGCATCATCATCATCTACCTTGTTATTAGCTGAATCAAATTCAAACCTCTCCAGTGAAAATAGCATCTTCTATAATAGTAACACTAATAAACCCACAACACAATCTATGTGCTATGCTTCAAGTGCTGACAACATAGCTCGTTTGTTGAAAGGGTGGATGAAAAATACACCAAAATTAGCCTCATGTGCTGCCTCAGCTGTGACTCAAAATTCCTTTAACAACTTGGCTGGTGCTGACACTGCTTTTAGTGAAGGAATTACAACAACAAAGGGAAGCACAAGCACTAGTACTGTTGAGTTGTCTGAGACTTTTGACTCCTTGTTTGGTTATGAGTCTTTGGATTATTCTTCAAATTCTGAGTTCTCACCATCTCTTTCTCCCGAGGCTACTCCTTTCCAAGATGAGAGCAAGCCAGATATAACTGCAGATGGAATAGACATGCCTTTCTCTTTGCTTGAGAAATGGCTTCTAGATGATGCTGCTTGTCAAGAGAAACTTGGCTTCTAG 1002 0.4082 MGRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPSNWKAVPANTGLSRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLNKLEAGSDQGHNIGVSVSQPMSRGQWERRLQTDIRMAKRALIEALSSNKASSSSTLLLAESNSNLSSENSIFYNSNTNKPTTQSMCYASSADNIARLLKGWMKNTPKLASCAASAVTQNSFNNLAGADTAFSEGITTTKGSTSTSTVELSETFDSLFGYESLDYSSNSEFSPSLSPEATPFQDESKPDITADGIDMPFSLLEKWLLDDAACQEKLGF 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00463 333 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma13g00463 333 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma13g00463 333 CDD SANT 69 112 IPR001005 -
Gma13g00463 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma13g00463 333 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 331 - -
Gma13g00463 333 CDD SANT 16 61 IPR001005 -
Gma13g00463 333 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma13g00463 333 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 331 - -
Gma13g00463 333 SMART sant 66 114 IPR001005 -
Gma13g00463 333 SMART sant 13 63 IPR001005 -
Gma13g00463 333 Gene3D - 69 129 - -
Gma13g00463 333 MobiDBLite consensus disorder prediction 281 296 - -
Gma13g00463 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma13g00463 333 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma13g00463 333 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma13g00463 333 MobiDBLite consensus disorder prediction 281 300 - -
Gma13g00463 333 Gene3D - 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00463 Gma-Chr13 16919054 16920379 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00463 1 333 MYB Transcription Factor Family AT5G62470 49.189 6.36e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g00463 Myb_DNA-binding 6.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00463 K09422 - gmx:780542 631.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00463 13 16919054 16920379 Gma19g00195 19 2474702 2476609 GST
Gma13g00463 13 16919054 16920379 Gma18g02367 18 57773473 57775155 PCT
Gma13g00463 13 16919054 16920379 Gma09g02190 09 47375727 47377396 PCT
Gma18g02367 18 57773473 57775155 Gma13g00463 13 16919054 16920379 PCT
Gma09g02190 09 47375727 47377396 Gma13g00463 13 16919054 16920379 PCT