Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00462 ATGACCCGGATCCATCAAAACCCGAACCCGAATCCAAAGCCGGTGTCTTTCTCCAACGGCGTCTTGAAGCGCCACCATGTAAACCACCGCGCCGCGGTGGTTTACAAGGAATGCCTGAAGAACCACGTGGCGAGCTTGGGTGGCCACGCTTTGGACGGCTGCGGCGAGTTCATGCCGTCGCCGGCGGCCACCGCCGACGACCCCAGCTCCATCAAATGCGCCGCCTGCGGCTGCCACCGGAACTTCCACCGCCGCGAACCGGAGGAGTCACCCATTTCTCCGGCGACACATCACGTCCTCGAGTACAGGCCACACCACCGCCACCACCCTCCGCCGCCTCACCGGAGTCCCAACTCCGCCTCCCCGCCGCCGATCTCATCCTACCCCTCGGCGCCCCACATGCTCCTCGCCCTCTCCGGCGGGGCCGGCCTCTCCGTCGCGCCGGAAAACACCGCCGCGCCGGCGCCGCCGCACCACTCGCGTAAACGCTTCCGGACGAAGTTCACCCAAGAACAAAAGGAGAAGATGCACGAGTTCGCGGACAAAGTTGGTTGGAAGATGCAGAGGCGCGACGAGGAAATGGTTATGGAGTTCTGCAACGAGATTGGTGTCGACAGAGGAGTTCTCAAAGTGTGGATGCACAACAACAAGAACACTTTCGCGAAAAAAGACAACCTTAACGGCAACAGTATCGGTAACGTTGCCATTGTCAGTGCCAACGGAGTTGCTCCCATTGGCGCCGTTGGCAGCGCTACCGTTAGAAGCAGCGTTCATGTCCACGAACATGAACACGGAGGAATTAACGGTAACGGTAGCGGCGACAACAACCACAACCCCCTCGGTTCCCGGGATGTGAACGAGTACGAGAATGATAGTGGGACTAACGGCGGCGGCGGTACTAATGGGTCTTCTTCTTCTTCTTGA 924 0.5996 MTRIHQNPNPNPKPVSFSNGVLKRHHVNHRAAVVYKECLKNHVASLGGHALDGCGEFMPSPAATADDPSSIKCAACGCHRNFHRREPEESPISPATHHVLEYRPHHRHHPPPPHRSPNSASPPPISSYPSAPHMLLALSGGAGLSVAPENTAAPAPPHHSRKRFRTKFTQEQKEKMHEFADKVGWKMQRRDEEMVMEFCNEIGVDRGVLKVWMHNNKNTFAKKDNLNGNSIGNVAIVSANGVAPIGAVGSATVRSSVHVHEHEHGGINGNGSGDNNHNPLGSRDVNEYENDSGTNGGGGTNGSSSSS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00462 307 Gene3D - 148 222 - -
Gma13g00462 307 Pfam ZF-HD protein dimerisation region 33 87 IPR006456 -
Gma13g00462 307 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 35 86 IPR006456 -
Gma13g00462 307 MobiDBLite consensus disorder prediction 104 125 - -
Gma13g00462 307 MobiDBLite consensus disorder prediction 269 307 - -
Gma13g00462 307 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 35 86 IPR006456 -
Gma13g00462 307 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 161 218 IPR006455 -
Gma13g00462 307 MobiDBLite consensus disorder prediction 254 307 - -
Gma13g00462 307 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 12 255 - -
Gma13g00462 307 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 12 255 - -
Gma13g00462 307 SUPERFAMILY Homeodomain-like 151 222 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00462 Gma-Chr13 16859098 16860021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00462 13 217 ZF-HD Transcription Factor Family AT5G15210 56.682 1.52e-70 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gma13g00462 ZF-HD_dimer 8.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00462 - - gmx:100814730 535.798
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00462 13 16859098 16860021 Gma19g00198 19 2531998 2533613 GST
Gma13g00462 13 16859098 16860021 Gma18g02369 18 57808294 57810009 PCT
Gma13g00462 13 16859098 16860021 Gma09g02187 09 47341864 47342862 PCT
Gma18g02369 18 57808294 57810009 Gma13g00462 13 16859098 16860021 PCT
Gma09g02187 09 47341864 47342862 Gma13g00462 13 16859098 16860021 PCT