Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00453 ATGGGACGATCACCATGTTGCGACAAGGTAGGTTTAAAGAAAGGACCATGGACTCCTGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGCCATGGAAGCTGGCGTGCCTTGCCAGCAAAAGCTGGACTTCAGAGGTGTGGCAAGAGTTGCAGACTAAGATGGACCAATTATCTCAGGCCTGACATTAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAACTCCATGCCCTCTTAGGAAACAGGTGGTCGGCAATAGCCACACACTTGCCAAAGAGAACGGACAATGAGATCAAGAACTATTGGAATACGCATCTTAAGAAAAGGTTAACCAAAATGGGAATTGACCCTGTGACACACAAGCCTAAAAACGATGCACTTCTCTCTAGTGACGGCCAATCCAAAACCGCTGCAAACCTCAGCCACATGGCTCAGTGGGAGAGTGCTCGCCTTGAAGCTGAAGCAAGACTTGTAAGAGAGTCAAAAATACGTTCACATTCACTTCAGCAACAATTTGGAAGTAGTTCTTCTACATTTGCATCTTCTTCTTCTGCATCAACTTCAGCTTCAGCTCTCAATAATAATAGTAATAATAAGCCGGAAGCACCCCCGCCACCGccaccgccgccaccaccgtcgccaccaccgtcgcGATCTTCTCTTGATGTTCTGAAGGCTTGGAATAGTGGAGGGTGGCTAAAATCTAATGAAGGAAGCGGTGCCATTGCAAGCAATGTTGGGGTAAGTGGGGACCTTGAGTCTCCTACTTCTACACTATCTTTCTCTGAGAATGCACCACCAATTATGAATGGAATTAGAGGAGAAAATAACAACAACAACAACAATGATAGTGCAATGCCTATGATTGAGTTTGTGAGGATTTCAGGCAATTCTTCTTCTCTTGTGAAAGAAGAAGGTGAGCAAGAGTGGAAAGGTACTTATGATAGTTCCATCACTACTTTTAGTTCTAGTCTGCATGAGTTCACTATGAACATGGAAGGCACGTGGGCCTCTGAGTCCCTTAGGACTAGTGGCTCACATGATGATGACATTGTTGAAGAAGGCTTCACCAATCTTTTGCTTAAAACAAACTCTGAGGACCCAAATTTATCATCGGAGGGTGGGGGACAGTCTAACAATGACGATGGTGGCGATGGAAGCAATAATGATTTTTATGAAGATAACAATAATTATTGGAACAGCATTCTCAACTTAGTGAATTCTTCCCCTTCTCATCCCCCTATGTTCTAA 1269 0.4216 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKRLTKMGIDPVTHKPKNDALLSSDGQSKTAANLSHMAQWESARLEAEARLVRESKIRSHSLQQQFGSSSSTFASSSSASTSASALNNNSNNKPEAPPPPPPPPPPSPPPSRSSLDVLKAWNSGGWLKSNEGSGAIASNVGVSGDLESPTSTLSFSENAPPIMNGIRGENNNNNNNDSAMPMIEFVRISGNSSSLVKEEGEQEWKGTYDSSITTFSSSLHEFTMNMEGTWASESLRTSGSHDDDIVEEGFTNLLLKTNSEDPNLSSEGGGQSNNDDGGDGSNNDFYEDNNNYWNSILNLVNSSPSHPPMF 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00453 422 CDD SANT 69 112 IPR001005 -
Gma13g00453 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Gma13g00453 422 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Gma13g00453 422 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Gma13g00453 422 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Gma13g00453 422 CDD SANT 16 61 IPR001005 -
Gma13g00453 422 Gene3D - 69 116 - -
Gma13g00453 422 MobiDBLite consensus disorder prediction 171 204 - -
Gma13g00453 422 MobiDBLite consensus disorder prediction 119 147 - -
Gma13g00453 422 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Gma13g00453 422 MobiDBLite consensus disorder prediction 171 229 - -
Gma13g00453 422 SMART sant 66 114 IPR001005 -
Gma13g00453 422 SMART sant 13 63 IPR001005 -
Gma13g00453 422 MobiDBLite consensus disorder prediction 369 398 - -
Gma13g00453 422 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Gma13g00453 422 MobiDBLite consensus disorder prediction 132 147 - -
Gma13g00453 422 PANTHER TRANSCRIPTION FACTOR MYB106 1 415 - -
Gma13g00453 422 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Gma13g00453 422 Gene3D - 13 66 - -
Gma13g00453 422 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 415 - -
Gma13g00453 422 MobiDBLite consensus disorder prediction 205 224 - -
Gma13g00453 422 MobiDBLite consensus disorder prediction 256 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00453 Gma-Chr13 16686445 16688841 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00453 1 417 MYB Transcription Factor Family AT3G01140 53.461 1.08e-123 360
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gma13g00453 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00453 K09422 - gmx:100787446 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma13g00453 13 16686445 16688841 Gma09g02165 09 47096266 47099870 PCT
Gma09g02165 09 47096266 47099870 Gma13g00453 13 16686445 16688841 PCT