Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma13g00446 ATGGCAGCTCTTGTAATAACTGTGTCACAAGATGGAACCGGACAGTACAGGACGGTGCAGGAAGCCATAGATGCTGTGCCACTCGGCAACACTCGCCGGACGGTGATTAGGGTGTCCCCGGGAACCTACCGGCAGCCCCTCTACGTGGCAAAGACTAAGAACTTCATCACCCTCGTTGGTCTGCGCCCCGAGGACACTGTTCTCACTTGGAACAACACTGCCACCTCAATCCACCACCACCAGGATGCTAGGGTGATAGGGACTGGAACCTTTGGTTGTGGCACCATCATTGTGGAAGGGGGGGACTTTATTGCTGAGAATATTACCTTCGAGAATTCTTCCCCTCAGGGTGCAGGGCAAGCAGTAGCAGTTAGAGTAACAGTAGATCGTTGTGCTTTCTATAATTGCAGGTTCCTTGGATGGCAGGACACACTATATTTACATTATGGAATACAATATTTGAAAGATTGTTATATTGAAGGAAGTGTGGACTTCATATTTGGCAATAGTACTGCACTCTTGGAACATTGTCACATCCATTGCAAGTCCGCAGGGTTCATAACTGCTCAAAGCAGAAACTCTCCACAGGAAAAAACTGGTTATGTATTCCTCAGATGTGTTGTCACAGGTAATGGGGGAACTTCATATGCATATCTTGGAAGACCATGGAGACCTTTCGCAAGAGTGGTCTTTGCATTCACTTACATGGATCAATGTATAAAGCCTGCTGGCTGGAATAATTGGGGGAAAATTGAGAATGAAAAAACTGCTTGCTTCTATGAATACAGGTGTTTTGGACCTGGTTGGTGTCCATCCCAACGAGTAAAATGGGCTAGAGAATTACAAGCTGAAGCAGCAGAGCAGTTTCTCATGCATAGCTTCATTGACCCAGAATCAGAGAGACCTTGGCTTGCTCAAAGAATGGCTCTGAAGATTCCATATTCTGCTTAA 951 0.4616 MAALVITVSQDGTGQYRTVQEAIDAVPLGNTRRTVIRVSPGTYRQPLYVAKTKNFITLVGLRPEDTVLTWNNTATSIHHHQDARVIGTGTFGCGTIIVEGGDFIAENITFENSSPQGAGQAVAVRVTVDRCAFYNCRFLGWQDTLYLHYGIQYLKDCYIEGSVDFIFGNSTALLEHCHIHCKSAGFITAQSRNSPQEKTGYVFLRCVVTGNGGTSYAYLGRPWRPFARVVFAFTYMDQCIKPAGWNNWGKIENEKTACFYEYRCFGPGWCPSQRVKWARELQAEAAEQFLMHSFIDPESERPWLAQRMALKIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma13g00446 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
Gma13g00446 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
Gma13g00446 316 SUPERFAMILY Pectin lyase-like 2 303 IPR011050 -
Gma13g00446 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Gma13g00446 316 Gene3D - 2 310 IPR012334 -
Gma13g00446 316 PANTHER PECTINESTERASE 1 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma13g00446 Gma-Chr13 16567622 16571417 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma13g00446 5 309 Carbohydrate Esterase AT5G47500 39.365 1.48e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma13g00446 K01051 - gmx:100810259 660.988